Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2144 497 1e-135 seq19922 158 2e-33 >seq2144 Length=13752 Score = 497 bits (550), Expect = 1e-135 Identities = 1244/1877 (66%), Gaps = 12/1877 (1%) Strand=Plus/Minus Query 68361 ATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACAT 68420 || |||||| | ||||||||||| | || ||| || || || || ||||| ||||| Sbjct 4935 ATTCTTATCTACAGTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACAT 4876 Query 68421 ACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACT 68480 || ||||| ||||| |||| | ||||||| || ||| || || |||| | Sbjct 4875 TCCTGTTTTAAGACCCGCTTTCCAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATT 4816 Query 68481 TGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGC 68540 ||| || |||| ||||||||| | |||||||||||||| ||||||||||| | |||||| Sbjct 4815 TGGTTCAGCTACATGAATATTAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGC 4756 Query 68541 CGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGAT 68600 |||||||| || | |||| | |||||||||| |||||| | | | | Sbjct 4755 TGCCATTTTGATTGTGGACTTTACGGATATTTCCCAAACGGTCTTATATAGTTCACGCAC 4696 Query 68601 ATCATCTGGAAGGCT--CG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTT 68657 || | |||| | | || | ||||| ||||| |||| | | || ||| ||| || Sbjct 4695 ATTTTGAGGAATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATTTTT 4636 Query 68658 GATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTAT 68717 || ||||||| |||||| | || |||| | | | | | ||| |||| || | Sbjct 4635 CATATCATCATCCCACAAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCACAAC 4576 Query 68718 TTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 68777 ||||| || ||||| | ||||| | ||||| || || || || ||||| | ||| Sbjct 4575 CTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAAAGA 4516 Query 68778 TTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACT 68837 ||||||||| |||| || || || || ||||| |||||||| ||||| | | | | Sbjct 4515 TTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAGAGA 4456 Query 68838 ATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA 68897 ||| | | || || | | || || || || || | ||| ||||| |||| | Sbjct 4455 ATTACGCACTCCGTGCTTGCTTATCTTCTCCTTGAGTTTCGCCCAGTCCCAGAGATTTGT 4396 Query 68898 TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATA 68957 ||||| |||||| | ||| || || ||||| || || || | ||| | ||| Sbjct 4395 GGGTACCTTATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGACTTCCCTCATA 4336 Query 68958 TGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATA 69017 || ||||| | || || | ||||| || ||||| || || || ||||| || || || Sbjct 4335 GGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCAATGCGCCATAGTA 4276 Query 69018 AATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATG 69077 ||| |||||||| |||| | ||| ||| || | ||| || | ||||| | Sbjct 4275 AATGGTTTCGAATATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAGGGATACCG 4216 Query 69078 TAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTT 69137 | | ||| || |||||||| | ||| ||||| ||||| || || || | |||||| | Sbjct 4215 CATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATGTCT-TA 4157 Query 69138 ATTTGAACTT-TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT-AAGA 69195 | ||| | || | ||| || || | ||| || ||||| ||||| || || || || ||| Sbjct 4156 AGTTGGATTTCTTAGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTTGTTCAAGT 4097 Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TCGTC-CATCT 69252 ||| || || | || || || || || || | ||| || | || || | | Sbjct 4096 TTTTGGTA-ACAATCTTGGTGACCTCTTTGAGCTTCACAAAGTCGTACGTCTTCTCCGGT 4038 Query 69253 ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTT 69312 | || |||||||| || |||| ||||| | ||| ||||| || | ||||| | Sbjct 4037 GTTACGAACATATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCTGGTGCA 3978 Query 69313 GCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGA 69372 | ||| | | || || || || | ||||| ||||| || || |||| |||||| || Sbjct 3977 GAATACTCAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTGTTGG 3918 Query 69373 TTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGA 69432 || ||||| |||||| | |||||| | || || |||| || ||||| || | || Sbjct 3917 TTGCTCTTGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCACTTGT 3858 Query 69433 GATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCT 69492 || || || || | ||||| | ||| || || || || || ||| Sbjct 3857 GACTCAATGATGGCAAACCAAAGGGATTGAGCCTTGATAACACGATTTGCTCGACCCTCC 3798 Query 69493 TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 || || |||| |||||| ||| || || | ||| |||||||||||| | | ||| ||| Sbjct 3797 TTCTCGTATTTTGTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCGAGTCCTGGA 3738 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 || | | || ||||||| |||||| | |||| | | || || |||||||| | | Sbjct 3737 CACTTGTGCGGGCACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTCATAAACAAA 3678 Query 69613 TCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtt 69671 || || ||||| || || ||| || ||||| | | | || ||| || || || || || Sbjct 3677 TCTGGTATCCACAGGGC-ATAGAACAGATCCCGAGCACGATGTTCCTCTTTGCCAGTGTT 3619 Query 69672 ttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 69731 || |||||||| | ||||| | | ||| |||||||| || || || || || || | Sbjct 3618 CTTCTTAAGATCCAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGTAAATGGCAAA 3559 Query 69732 GACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCT 69791 |||| |||| ||| || |||||||| | || | || || ||| | ||||| Sbjct 3558 AGCTCCAGGTCTTTTGCCGCCACCCTGATCCACATAACGTGCCACATTGTTAAATACTCT 3499 Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851 |||||| |||| | ||||| ||| ||||||| || ||| ||| || |||| | || Sbjct 3498 CAGCATAGGAACCAAGCCATTGGATGTACCATTGGTGCCACTAATCGAAGTTCCCTTGGC 3439 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 ||||| | | | ||||| || || ||||| || ||||| | ||||| | Sbjct 3438 CCGAATGCAATGCACATTCAGACCAATACCACCTGCTGACTTTGAGATCATCGCACACTG 3379 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 | || | | | | || ||||| || ||| || |||| | || ||||| || Sbjct 3378 CTCCACAGATTTAAAGATTCCCTCGATTGAGTCAGATACCATGGTGAGGAGAAAGCATGA 3319 Query 69972 AGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 ||||| ||| | || | ||| | || || | ||| || || || || ||||| | Sbjct 3318 AGACAGCTGAGGGCGTGTGGTTGCAGCTGCGAAAAGTGTTGGTGAGGCATGTGTGAAGAA 3259 Query 70032 TTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCC 70091 ||| ||||||| |||||| || || | || || || ||||| ||| || || Sbjct 3258 GCGTTCCGAAAGCAAATTGTAAGTCTCCAGTGCGGAATCAATATCATCTCCATGTATACC 3199 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAA 70151 || || || ||||||| ||| ||||| || ||||| | ||| ||| ||||| || Sbjct 3198 GATGGCAACTCGCATCAGCATGTGCTGTGGACGTTCAGCAACTTTGCCATTGATTTTTAA 3139 Query 70152 CAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 || || ||| |||| ||| || || |||||||| || || ||| || | ||||| Sbjct 3138 CAAATACGATCGCTCCAAAGTCTTGAATCCAAAATAATTATAGCCAAAATCACGATCGTA 3079 Query 70212 AATAATAACAGAATTTA 70228 ||||| |||| |||| Sbjct 3078 TATAATGGCAGAGTTTA 3062 >seq19922 Length=1369 Score = 158 bits (174), Expect = 2e-33 Identities = 438/665 (66%), Gaps = 9/665 (1%) Strand=Plus/Minus Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || | ||| || ||||||||||| || || || || || | || || | || || Sbjct 1341 CATGCCGACGAGATTGACTGGTAGAGCGTCTGTAAGGAATTCCTGCTCTATCTTCACAGC 1282 Query 39553 CTCTGTTATTATC--GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAAC 39610 || | || ||| |||| | | |||| ||| || | || | || || | ||| Sbjct 1281 ATCCGAGATGATCTCGATGATGCG--CTCACGACTGGGACGCTGTACCAAGTGCTGGAAC 1224 Query 39611 ATTAAGCAG-GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669 || ||||| || || || ||||| || ||||| || | || | || || || || Sbjct 1223 AT-AAGCACAGCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAA 1165 Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729 || || || ||||| ||||||||||| || ||||| || || | |||||| || Sbjct 1164 GGTAAGACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCCGCT 1105 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT 39789 |||||||||||||| || || ||||| |||| | | ||| || | ||| | || Sbjct 1104 GAAGAAGATGCCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGCCTT 1045 Query 39790 --ATG-TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 | | ||||| | | |||||||| || || ||| ||| ||||| ||||| || Sbjct 1044 CGAGGAGATCCAAGACAGAGCCCAATCTGCCTTACGCTTCACAGCGGGCATCGTTTCAAT 985 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 ||||| ||||| || | | || ||| || || || || || | || || Sbjct 984 GGCATTGAAGAGGTAGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGCACGCT 925 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 |||||||| || |||| || || || || ||||| || || ||||| || | ||| || Sbjct 924 GTACATTTCCGAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTC 865 Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 || ||||| || || | || | || | | ||| ||||| || || || ||| Sbjct 864 TGTGATTTGCACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTCAGA 805 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 |||||||| || ||||| |||||| ||| || | |||| | ||| | | | Sbjct 804 GGCGGCAAAGAAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAGTCGAGC 745 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 |||||| | || || || |||| ||| ||||| || | ||||| || || || || || Sbjct 744 CCAGTCGGTCATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGCTTCGGC 685 Query 40147 CTTTT 40151 ||||| Sbjct 684 CTTTT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686496079433880