Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12094 154 1e-32 seq19922 134 1e-26 seq4992 132 4e-26 seq6480 122 7e-23 >seq12094 Length=5217 Score = 154 bits (170), Expect = 1e-32 Identities = 346/518 (67%), Gaps = 10/518 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || || || |||||||| |||| | |||| ||||| || ||||||||| ||| Sbjct 3620 CCGAAGATCGTCAATGGTCCGCAAATTCTCGATAAGTATGTGGGCGAATCGGAAGCCAAT 3679 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || || ||| | || || || || || || ||| | || ||| | || | || ||| | Sbjct 3680 GTGCGTCGTCTATTCGCCGAGGCAGAGGAGGAAGAGAAGCGTCTGGGACCGAACAGTGGT 3739 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608 |||| || || ||| | ||||| | || || ||||| |||||| | || || | | | Sbjct 3740 CTGCATATCATCATATTCGATGAGATTGATGCGATCTGCAAGCAACGTGGCTCCGTGGCA 3799 Query 19609 ------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || || || ||||| || ||||| | || | || | || || ||| Sbjct 3800 GGCAACAGTGGTGTCCACGATACTGTGGTGAATCAGTTGCTCACCAAGATCGATGGCGTT 3859 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| || ||| | || ||||||||||| ||| ||| || | || ||| Sbjct 3860 GATCAGTTGAACAACATTCTGGTGATTGGCATGACCAATCGACGCGACATGATCGACGAT 3919 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || || | ||||| ||||| ||||| || | || || || | | | ||| |||| Sbjct 3920 GCTCTACTGCGACCTGGTCGATTGGAGGTACAAATGGAGATCAGCCTGCCCAATGAGCAG 3979 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 |||||||| | || | ||||| ||||| || | |||||| | ||| | | Sbjct 3980 GGACGTGTACAGATCCTCAACATTCATAC--GAAGCGTATGCGAGATTTCAACAAGATCA 4037 Query 19841 ATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAAC 19900 |||||||| ||| | || || || ||| ||||| |||| |||||| || || | Sbjct 4038 GCGACGATGTCGATTGCAAGGAGATCGCTGCGCTCACCAAGAACTTTAGCGGTGCCGAGC 4097 Query 19901 TTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | ||||| |||||| | ||||| || || | ||| ||| Sbjct 4098 TGGAGGGCTTAGTGCGTGCCGCACAGTCGAGTGCCATG 4135 >seq19922 Length=1369 Score = 134 bits (148), Expect = 1e-26 Identities = 296/439 (67%), Gaps = 6/439 (1%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| || ||||| || ||||| || || ||||| ||| | || || || Sbjct 784 GTTTTGGCTTTCTTTGCCGCCTCTGACGGCATTGTTAATGAGAATCTTGTCGAGCGCTTC 843 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 || ||||| ||| | |||| ||||| || |||||||| || || |||||||| || Sbjct 844 AGCCAGGAAGTGCAAATCACAGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAG 903 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 ||| | || |||||||||||||| | || || || || ||||| ||| ||| || Sbjct 904 AATGTCCACTCGGAAATGTACAGCGTGCTCATCGACACTTACATTCGGGATCCGCATCAG 963 Query 44030 AAGCATCGA-TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088 || | | | || ||||| || ||||| | || || | || | ||| ||||| || Sbjct 964 -CGCGACTACCTCTTCAATGCCATTGAAACGATGCCCGCTGTGAAGCGTAAGGCAGATTG 1022 Query 44089 GGCCCTTAAATGGATAAATTCAAATGATTC---TTTTGGAGAACGACTTGTCGCGTTTGC 44145 ||| || ||||| || || | | ||||| || || | | || ||||| Sbjct 1023 GGCTCTGTCTTGGATCTCCTCGAAGGCGGCAAACTTTGGCGAGCGCATCATTGCCTTTGC 1082 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205 | ||| |||||||| ||||| || |||||| | || || ||| | ||||| || Sbjct 1083 TGCTGTCGAAGGCATCTTCTTCAGCGGCAGTTTTGCGTCGATCTTCTGGCTGAAGAAGCG 1142 Query 44206 AGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265 ||| | ||||| || | || || || |||||| | || || || || || | || Sbjct 1143 TGGTCTTATGCCCGGTCTTACCTTCTCGAATGAGCTGATCTCCCGCGACGAGGGACTTCA 1202 Query 44266 TTGCGATTTTGCT-TGCTT 44283 ||||||||||||| ||||| Sbjct 1203 TTGCGATTTTGCTGTGCTT 1221 >seq4992 Length=13869 Score = 132 bits (146), Expect = 4e-26 Identities = 378/578 (65%), Gaps = 10/578 (2%) Strand=Plus/Plus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || || || ||||| || |||||||| | || || | ||||| || Sbjct 11415 AATTGGTGGCCTGGACAATGAGTTCAATGCCATCTTTCGACGTGCGTTCGCCTCGCGCGT 11474 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 ||| | | || | | |||| ||||| |||||| || || | ||||| || Sbjct 11475 GTTTCCCCCTGAACTGGTGGAACAGTTGGGCATTAAACACGTCAAGGGCATATTGCTGTA 11534 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAA 19421 ||| || || ||| || ||||| | || || ||| | || | | | || ||| Sbjct 11535 TGGACCGCCTGGTACCGGCAAAACGCTGATGGCCAGACAGATTGGCACCATGCT--CAAT 11592 Query 19422 ACAACCTC-CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 || | ||||| |||||||||||||| | ||| | | || ||||| ||| | ||| Sbjct 11593 GCACGCGAGCCAAAGATTGTAAATGGTCCCCAGATCCTGGACAAGTATGTGGGTGAGTCG 11652 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGC 19539 || | ||| | || ||||||||||| || || || || || |||| ||| | || | | Sbjct 11653 GAGGCCAATATCCGCCGTTTGTTTGCCGAAGCCGAGGAGGAGGAAAAGCGTCTTGGACCC 11712 Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || || | | ||||||||||| | || || | || || ||||| ||| | | || Sbjct 11713 AATAGCGGTCTTCACATTATAATTTTTGACGAGATCGATGCCATCTGCAAGGCACGTGGC 11772 Query 19600 TCTGGTG------TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 || | || | || || || || || || |||||||| || || | ||| | Sbjct 11773 TCCGTTGCGGGCAACAGCGGCGTGCACGATACGGTAGTCAATCAGCTGTTGGCCAAAATC 11832 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTA 19713 ||||| || | ||| |||| || || || || ||||||||||| ||| | || | Sbjct 11833 GACGGCGTGGAGCAATTGAACAACATATTGGTGATTGGCATGACCAATCGTAGAGACATG 11892 Query 19714 ATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCC 19773 || ||| || || | ||||| ||||| ||||| | |||| ||||||| | ||| Sbjct 11893 ATTGACGAGGCGTTGCTTCGACCTGGTCGCTTGGAGGTTCAGATGGAAATTAGTCTCCCC 11952 Query 19774 GATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 | || ||||| ||| | || | ||||||||||| Sbjct 11953 AACGAGGAGGGACGAGTGCAGATCCTCAACATACATAC 11990 >seq6480 Length=6706 Score = 122 bits (134), Expect = 7e-23 Identities = 288/434 (66%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922 ||||||||| | ||||| ||||||| ||||| | ||| ||||| || || |||| Sbjct 372 GAAGGTGATTTGGGTCCCATTTATGGTTTTCAATGGCGTCATTTCGGTGCCGCATATCGT 431 Query 40923 ACTATGTACTCTGATTATACCAATA---AAGGAATGGATCAATTACAGTGCGTTATAGAT 40979 ||| | | |||| || |||| | || || |||||| | || ||||| || Sbjct 432 ACT---TGCAATGATGATTACAATGGCGAGGGCATTGATCAACTGCAACAGGTTATCGAC 488 Query 40980 ACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039 || || | ||||| | ||||| || ||| || | || ||||| ||| ||| Sbjct 489 ACCATACGCAACAATCCCTCTGATCGACGCATCATAATGAGTGCATGGAATCCAGTGGAT 548 Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAA---- 41095 ||| |||||| |||| || || || | | |||||||| || | | Sbjct 549 ATACCCAAGATGGCTCTGCCGCCGTGCCACTGCCTGGCGCAGTTTTATGTCTCACAGTCT 608 Query 41096 --TGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 ||||||||| || ||||| ||||||| | | ||||||||||| || || || Sbjct 609 CGTGGTGAACTCTCGTGTCAGCTGTATCAGCGCAGTGCGGACATGGGACTCGGCGTTCCC 668 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 |||||||| || ||||| |||||||| || ||||| || || || || | ||| Sbjct 669 TTTAACATTGCATCCTATGCACTGCTCACCTACATGATCGCCCATGTCACTGGGTACAAA 728 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 |||||||| ||||| ||||| || || |||| ||| | || ||||| ||||||| Sbjct 729 CCTGGTGACTTTGTGCACACCTTGGGCGATGCTCATGTCTATTCGAATCATGTAGAGCCA 788 Query 41274 TTAACAGAACAACT 41287 ||| || ||||| Sbjct 789 CTAAAGGAGCAACT 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397223163692335