Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq12094 154 1e-32
seq19922 134 1e-26
seq4992 132 4e-26
seq6480 122 7e-23
>seq12094
Length=5217
Score = 154 bits (170), Expect = 1e-32
Identities = 346/518 (67%), Gaps = 10/518 (2%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
|| || || || |||||||| |||| | |||| ||||| || ||||||||| |||
Sbjct 3620 CCGAAGATCGTCAATGGTCCGCAAATTCTCGATAAGTATGTGGGCGAATCGGAAGCCAAT 3679
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
|| || ||| | || || || || || || ||| | || ||| | || | || ||| |
Sbjct 3680 GTGCGTCGTCTATTCGCCGAGGCAGAGGAGGAAGAGAAGCGTCTGGGACCGAACAGTGGT 3739
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608
|||| || || ||| | ||||| | || || ||||| |||||| | || || | | |
Sbjct 3740 CTGCATATCATCATATTCGATGAGATTGATGCGATCTGCAAGCAACGTGGCTCCGTGGCA 3799
Query 19609 ------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
| ||| || || || ||||| || ||||| | || | || | || || |||
Sbjct 3800 GGCAACAGTGGTGTCCACGATACTGTGGTGAATCAGTTGCTCACCAAGATCGATGGCGTT 3859
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
| || |||| || ||| | || ||||||||||| ||| ||| || | || |||
Sbjct 3860 GATCAGTTGAACAACATTCTGGTGATTGGCATGACCAATCGACGCGACATGATCGACGAT 3919
Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782
|| || | ||||| ||||| ||||| || | || || || | | | ||| ||||
Sbjct 3920 GCTCTACTGCGACCTGGTCGATTGGAGGTACAAATGGAGATCAGCCTGCCCAATGAGCAG 3979
Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840
|||||||| | || | ||||| ||||| || | |||||| | ||| | |
Sbjct 3980 GGACGTGTACAGATCCTCAACATTCATAC--GAAGCGTATGCGAGATTTCAACAAGATCA 4037
Query 19841 ATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAAC 19900
|||||||| ||| | || || || ||| ||||| |||| |||||| || || |
Sbjct 4038 GCGACGATGTCGATTGCAAGGAGATCGCTGCGCTCACCAAGAACTTTAGCGGTGCCGAGC 4097
Query 19901 TTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938
| ||||| |||||| | ||||| || || | ||| |||
Sbjct 4098 TGGAGGGCTTAGTGCGTGCCGCACAGTCGAGTGCCATG 4135
>seq19922
Length=1369
Score = 134 bits (148), Expect = 1e-26
Identities = 296/439 (67%), Gaps = 6/439 (1%)
Strand=Plus/Plus
Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909
|||||||| || ||||| || ||||| || || ||||| ||| | || || ||
Sbjct 784 GTTTTGGCTTTCTTTGCCGCCTCTGACGGCATTGTTAATGAGAATCTTGTCGAGCGCTTC 843
Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969
|| ||||| ||| | |||| ||||| || |||||||| || || |||||||| ||
Sbjct 844 AGCCAGGAAGTGCAAATCACAGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAG 903
Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029
||| | || |||||||||||||| | || || || || ||||| ||| ||| ||
Sbjct 904 AATGTCCACTCGGAAATGTACAGCGTGCTCATCGACACTTACATTCGGGATCCGCATCAG 963
Query 44030 AAGCATCGA-TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088
|| | | | || ||||| || ||||| | || || | || | ||| ||||| ||
Sbjct 964 -CGCGACTACCTCTTCAATGCCATTGAAACGATGCCCGCTGTGAAGCGTAAGGCAGATTG 1022
Query 44089 GGCCCTTAAATGGATAAATTCAAATGATTC---TTTTGGAGAACGACTTGTCGCGTTTGC 44145
||| || ||||| || || | | ||||| || || | | || |||||
Sbjct 1023 GGCTCTGTCTTGGATCTCCTCGAAGGCGGCAAACTTTGGCGAGCGCATCATTGCCTTTGC 1082
Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205
| ||| |||||||| ||||| || |||||| | || || ||| | ||||| ||
Sbjct 1083 TGCTGTCGAAGGCATCTTCTTCAGCGGCAGTTTTGCGTCGATCTTCTGGCTGAAGAAGCG 1142
Query 44206 AGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265
||| | ||||| || | || || || |||||| | || || || || || | ||
Sbjct 1143 TGGTCTTATGCCCGGTCTTACCTTCTCGAATGAGCTGATCTCCCGCGACGAGGGACTTCA 1202
Query 44266 TTGCGATTTTGCT-TGCTT 44283
||||||||||||| |||||
Sbjct 1203 TTGCGATTTTGCTGTGCTT 1221
>seq4992
Length=13869
Score = 132 bits (146), Expect = 4e-26
Identities = 378/578 (65%), Gaps = 10/578 (2%)
Strand=Plus/Plus
Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301
|||||| || || || ||||| || |||||||| | || || | ||||| ||
Sbjct 11415 AATTGGTGGCCTGGACAATGAGTTCAATGCCATCTTTCGACGTGCGTTCGCCTCGCGCGT 11474
Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361
||| | | || | | |||| ||||| |||||| || || | ||||| ||
Sbjct 11475 GTTTCCCCCTGAACTGGTGGAACAGTTGGGCATTAAACACGTCAAGGGCATATTGCTGTA 11534
Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAA 19421
||| || || ||| || ||||| | || || ||| | || | | | || |||
Sbjct 11535 TGGACCGCCTGGTACCGGCAAAACGCTGATGGCCAGACAGATTGGCACCATGCT--CAAT 11592
Query 19422 ACAACCTC-CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479
|| | ||||| |||||||||||||| | ||| | | || ||||| ||| | |||
Sbjct 11593 GCACGCGAGCCAAAGATTGTAAATGGTCCCCAGATCCTGGACAAGTATGTGGGTGAGTCG 11652
Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGC 19539
|| | ||| | || ||||||||||| || || || || || |||| ||| | || | |
Sbjct 11653 GAGGCCAATATCCGCCGTTTGTTTGCCGAAGCCGAGGAGGAGGAAAAGCGTCTTGGACCC 11712
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| || | | ||||||||||| | || || | || || ||||| ||| | | ||
Sbjct 11713 AATAGCGGTCTTCACATTATAATTTTTGACGAGATCGATGCCATCTGCAAGGCACGTGGC 11772
Query 19600 TCTGGTG------TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
|| | || | || || || || || || |||||||| || || | ||| |
Sbjct 11773 TCCGTTGCGGGCAACAGCGGCGTGCACGATACGGTAGTCAATCAGCTGTTGGCCAAAATC 11832
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTA 19713
||||| || | ||| |||| || || || || ||||||||||| ||| | || |
Sbjct 11833 GACGGCGTGGAGCAATTGAACAACATATTGGTGATTGGCATGACCAATCGTAGAGACATG 11892
Query 19714 ATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCC 19773
|| ||| || || | ||||| ||||| ||||| | |||| ||||||| | |||
Sbjct 11893 ATTGACGAGGCGTTGCTTCGACCTGGTCGCTTGGAGGTTCAGATGGAAATTAGTCTCCCC 11952
Query 19774 GATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811
| || ||||| ||| | || | |||||||||||
Sbjct 11953 AACGAGGAGGGACGAGTGCAGATCCTCAACATACATAC 11990
>seq6480
Length=6706
Score = 122 bits (134), Expect = 7e-23
Identities = 288/434 (66%), Gaps = 12/434 (3%)
Strand=Plus/Plus
Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922
||||||||| | ||||| ||||||| ||||| | ||| ||||| || || ||||
Sbjct 372 GAAGGTGATTTGGGTCCCATTTATGGTTTTCAATGGCGTCATTTCGGTGCCGCATATCGT 431
Query 40923 ACTATGTACTCTGATTATACCAATA---AAGGAATGGATCAATTACAGTGCGTTATAGAT 40979
||| | | |||| || |||| | || || |||||| | || ||||| ||
Sbjct 432 ACT---TGCAATGATGATTACAATGGCGAGGGCATTGATCAACTGCAACAGGTTATCGAC 488
Query 40980 ACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039
|| || | ||||| | ||||| || ||| || | || ||||| ||| |||
Sbjct 489 ACCATACGCAACAATCCCTCTGATCGACGCATCATAATGAGTGCATGGAATCCAGTGGAT 548
Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAA---- 41095
||| |||||| |||| || || || | | |||||||| || | |
Sbjct 549 ATACCCAAGATGGCTCTGCCGCCGTGCCACTGCCTGGCGCAGTTTTATGTCTCACAGTCT 608
Query 41096 --TGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153
||||||||| || ||||| ||||||| | | ||||||||||| || || ||
Sbjct 609 CGTGGTGAACTCTCGTGTCAGCTGTATCAGCGCAGTGCGGACATGGGACTCGGCGTTCCC 668
Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213
|||||||| || ||||| |||||||| || ||||| || || || || | |||
Sbjct 669 TTTAACATTGCATCCTATGCACTGCTCACCTACATGATCGCCCATGTCACTGGGTACAAA 728
Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273
|||||||| ||||| ||||| || || |||| ||| | || ||||| |||||||
Sbjct 729 CCTGGTGACTTTGTGCACACCTTGGGCGATGCTCATGTCTATTCGAATCATGTAGAGCCA 788
Query 41274 TTAACAGAACAACT 41287
||| || |||||
Sbjct 789 CTAAAGGAGCAACT 802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397223163692335
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |