Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2144 196 4e-45 seq42801 105 6e-18 seq355 96.9 3e-15 >seq2144 Length=13752 Score = 196 bits (216), Expect = 4e-45 Identities = 989/1554 (64%), Gaps = 53/1554 (3%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || || ||||| ||||||| |||||||| ||||| | ||||||||| ||| Sbjct 4931 TTATCTACAGTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACATTCCT 4872 Query 130466 GTTTTGAGTCCAATTTTGT--GTCCATAATTG--TGGATGCTGCACATTGTTTGGTAATT 130521 ||||| || || ||| | | || || |||||| || | ||||| Sbjct 4871 GTTTTAAGACCCGCTTTCCAGGAGAAGAAATGAATGGATGT----CAGCTTACCATAATT 4816 Query 130522 GGGTTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCT 130579 |||| || || |||||| | | ||||| ||||||||| ||||| || | ||| Sbjct 4815 TGGTTCAGCTACATGAATAT--TAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCT 4758 Query 130580 GCAGCCATGTCGAGCATGGT-TTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCT 130638 || ||||| | || ||| |||| | || |||||| ||||||| ||||| || | Sbjct 4757 GCTGCCATTTTGATTGTGGACTTTACGGAT-ATTTCCCAAACGGTCTTATATAGTTCACG 4699 Query 130639 AATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTT 130698 | | || || ||| | || ||| | | || | || || |||| || Sbjct 4698 CACATTTTGAGGAATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATT 4639 Query 130699 GCGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAAT 130758 |||| | ||| |||| | || | ||||| | |||||||| ||| | Sbjct 4638 TTTCATATCATCATCCCACAAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCAC 4579 Query 130759 GATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAA 130818 | ||||| || |||| ||| || ||||| ||| ||||| ||| | ||||| || Sbjct 4578 AACCTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAA 4519 Query 130819 GGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAG 130878 ||||| || || || | ||| || ||||| | ||| || ||||| ||| | | || Sbjct 4518 AGATTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAG 4459 Query 130879 AGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGA 130938 ||||||||| | |||||| | | || || ||| | || |||| ||||| ||| Sbjct 4458 AGAATTACGCACTCCGTGCTTGCTTATCTTCTCCTTGAGTTTCGCCCAGTCCCAGAGATT 4399 Query 130939 GGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGA 130998 || ||| || || |||||||||||| | || || || || || || | ||||| Sbjct 4398 TGTGGGT---ACCTTATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGACTTCC 4342 Query 130999 TTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCC 131058 || | | || || | || || |||||| || ||| |||||||| || || Sbjct 4341 CTCATAGGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCAATGCGCC 4282 Query 131059 GTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGG 131118 || |||||||||||| || |||| ||| | | ||| | | ||||| || || Sbjct 4281 ATAGTAAATGGTTTCGAATATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAGGG 4222 Query 131119 AAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATG 131178 | | ||||||||| ||||| ||||| || || || | |||| || | || | ||| Sbjct 4221 ATACCGCATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATG 4162 Query 131179 TTTTAAATTACATTT-----ACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTATT 131233 | |||| || |||| | || || ||| | ||| || || || || || Sbjct 4161 TCTTAAGTTGGATTTCTTAGCCTCGGGCAGAGGGTAG--TAA---TTGATATCGATGATC 4107 Query 131234 TTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTG 131293 ||||| || || ||||| | ||||| ||| | || | || || |||| Sbjct 4106 TTGTTCAAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAAAGTCGTACGT- 4048 Query 131294 CCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTT 131353 | || | |||| || ||| | | ||| || |||| ||| ||||| || | Sbjct 4047 --CTTCTCCGGTGTTACGAACATATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATC 3990 Query 131354 TCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCC 131413 || || | |||||| ||||||||| | |||||| ||||||| || || |||||| Sbjct 3989 TCATCTGGTGCAGAATACTCAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCC 3930 Query 131414 AAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCC 131472 | ||||||||| ||||| || || | ||| | |||||| | | |||||| || ||||| Sbjct 3929 ACATTTTGTTGGTTGCTCTT-GCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCC 3871 Query 131473 CGTTTCGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATAT 131530 || || ||||| | ||||| ||| | | |||| | || |||| |||||| Sbjct 3870 AGTCTCCACTTGTGACTCAATGATGGCAAACCAAAGGGATT--GAGC-----CTTGATAA 3818 Query 131531 TTGTATTGGC-CG--CGT--TTTTCGTAATTTTCGTACAACGTTTCAAAGTTTT--GGCC 131583 ||| || || | | || ||||| ||| || | | ||||| || | || Sbjct 3817 CACGATTTGCTCGACCCTCCTTCTCGTATTTTGTATAGAGCTCCTCAAACTTATCACCCC 3758 Query 131584 AAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTG 131643 |||| | | | | | ||||| | | || ||||| || ||||| | | || Sbjct 3757 AAAC-ATCAG-CGAGTCCTGGACACTTGTGCGGGCACATCAGTGACCAATCCTCATTGGC 3700 Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 ||| || ||||||||||||||||| || | ||| | || || |||||||| | ||| Sbjct 3699 TTCCACGCGCTTCATAAACAAATCTGGTATCCACAGGGCATAGAACAGATCCCGAGCACG 3640 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | || ||| | || | | || || | || || || || || | || | |||||| Sbjct 3639 ATGTTCCTCTTTGCCAGTGTTCTTCTTAAGATCCAAGAACTCAAAGACATCGGAATGCCA 3580 Query 131764 GGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACG 131820 || || | || | || | || || | || ||| || |||| |||| ||| Sbjct 3579 AGGCTCGAGGTAAATGGCAAAAGCTCCAGGTCTTTTGCCGCCACCCTGATCCACATAACG 3520 Query 131821 AACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCT 131880 ||| ||||| |||| | || ||| || |||| || |||| | |||||||||| Sbjct 3519 TGCCACATTGTTAAATACTCTCAGCATAGGAACCAAGCCATTGGATGTACCATTGGTGCC 3460 Query 131881 CTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934 |||| | | || ||||| | || || || || || |||||||| || Sbjct 3459 ACTAATCGAAGTTCCCTTGGCCCGAATGCAATGCACATTCAGACCAATACCACC 3406 >seq42801 Length=1186 Score = 105 bits (116), Expect = 6e-18 Identities = 235/343 (69%), Gaps = 16/343 (5%) Strand=Plus/Minus Query 49368 TCGCCGTTGTCGGCGTCAATTTCCCAAGCAAACAGTCCGCCCAGATTCAAATCCAGCACG 49427 ||||||||||| ||||| || ||||| | || || |||||||| | | ||||| |||| Sbjct 759 TCGCCGTTGTCCGCGTCGATCTCCCAGGAGAATAGGCCGCCCAGCTGCTTATCCAACACG 700 Query 49428 TA-TCGACTCTTGTCGACTACCGAGTCGACGCTATCGTAAC---TGATCAAGTCACCGGT 49483 || | | || | | | | ||||| | | ||||| | |||||| || ||||| Sbjct 699 TACTTGCCTTTGGCCTGCC-CCGAGCGGGC---ATCGTCAAAGGTGATCAGATCGCCGGT 644 Query 49484 GGACGCTTTAAAAACGTACGCCGCTTTAGCGACAGTGTCGTATGTGTACTTGTATTGCGC 49543 || | ||| || ||||| | ||||| || | |||||| ||||||| | | ||| Sbjct 643 GGTAGGTTTGAACACGTAAGGCGCTTCCGCCGTGGCGTCGTAGGTGTACTGCCACT-CGC 585 Query 49544 CGGCAACAAACTGTTTA-CAATTTGCCTGTAATCCACTACGCCGTCCTCCCAAGTGCCCA 49602 || | ||||| | | || || | ||| ||||| | ||||| |||||| ||||| Sbjct 584 CGCTCATGAACTGGCTGGCGATCTGGCGGTAGTCCACGATGCCGTTCTCCCAGGTGCCTT 525 Query 49603 CGACAGGACCACCGGCAACGCCTGTGAACGG---GTTGTCATCTGTGTAATCGTCGACTG 49659 ||| || || ||| ||| |||||||| ||||| |||| ||| ||| || Sbjct 524 TGACCGGCCCGGTGGCGGTGCCGGTGAACGGAATGTTGT--TCTG-GTAGCCGTTCACCC 468 Query 49660 CGGTCCAACCGCGGCCGTACATTGCCACTCCGATGACAATTTT 49702 |||||||||||||||| ||||| || |||| ||| || || Sbjct 467 CGGTCCAACCGCGGCCATACATGGCGGTGCCGACGACGATCTT 425 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 50031 CCCAAAATCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCGACGCCGTCG 50090 |||| | ||||||||||||||||||||||||| || |||||||| || || ||||||||| Sbjct 99 CCCAGATTCGGGTTGGCGCCTTTGCCGCCCGGGAATTCCCAGTCGATATCCACGCCGTCG 40 Query 50091 AAAAATTTCCA 50101 || || ||||| Sbjct 39 AAGAACTTCCA 29 >seq355 Length=9390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 || || || |||||||| || | || | || || ||||| || |||||| ||||| Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | |||||| || || ||| || |||| | || Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||| | | ||||||||| | ||| || | ||||| |||| |||||||||||| Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211 Query 27240 ATTTGCAT 27247 || ||||| Sbjct 9210 ATCTGCAT 9203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424685466390504