Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2144 192 7e-44 seq260 123 3e-23 seq19922 109 7e-19 >seq2144 Length=13752 Score = 192 bits (212), Expect = 7e-44 Identities = 919/1442 (64%), Gaps = 54/1442 (4%) Strand=Plus/Minus Query 118136 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 118195 ||| | ||| ||||| |||||| || | || ||||| ||||| || | || Sbjct 4590 ATGATGATTCACAACCTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGT 4531 Query 118196 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 118255 ||| || || || | ||||| ||||||| || |||||||| || || || ||||| || Sbjct 4530 GTAGGGTTCGAAAGATTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGG 4471 Query 118256 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCA 118315 ||| || || || ||||| | || | | || || |||||||| |||| Sbjct 4470 TGCGATAAGCAGAGAATTACGCACTCCGTGCTTGCTTATCTTCTCCTTGAGTTTCGCCCA 4411 Query 118316 GTCGTAGTTGAGCTTTGTCTCCCCCTG---CCACATATCAAACTGGAGGATACCTTGGGA 118372 ||| || || ||||| ||| |||||||||| ||||||| ||||| | | Sbjct 4410 GTCCCAG---AGATTTGTGGGTACCTTATTCCACATATCATACTGGAGAATACCCTTGCT 4354 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 118432 |||| ||||||| | |||||||| | ||| || ||| |||| || |||| || Sbjct 4353 AACTGGACTTCCCTCATAGGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGC 4294 Query 118433 CTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTC 118492 || | || | | || || ||||| || || | ||||| |||| || Sbjct 4293 TTCCAATGCGCCATAGTAAATGGTTTCGAATATCTGTTGATTCAGAAGACACGCCTTATC 4234 Query 118493 GGAATCAAACGCGAGTCGGCAC-AAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 118551 ||| | | || | ||| ||||| || |||| || || ||||| || || | | Sbjct 4233 ACTCTCATAGG-GATACCGCATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTC 4175 Query 118552 CAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCC 118608 ||||||| |||||||| | || || ||| ||| ||| || || || |||| Sbjct 4174 CAATTGGACGATGTCTTAAGTTGGATTTCTTAGC---CTCGGGCAGAGGGTAGTAATTGA 4118 Query 118609 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 118668 ||||||| | | | || | |||||||| |||| ||| |||| || | ||||| | Sbjct 4117 TATCGATGATCTTGTTCAAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAA 4058 Query 118669 AATCAAAACTGCGAGTCTCTTCATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATT 118726 | || | || | ||| | || || || || || || || || |||| ||| Sbjct 4057 AGTCGTA----CGTCT-TCTCCGGTGTTACGAACATATTGAGAGCTATCGATGCCAAATT 4003 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 || |||| ||||||| ||| ||||| | |||||| ||||||||||| | Sbjct 4002 GCAAACAGCAATCTCATCTGGTGCAGAATACTCAACAATTTCAGTGCACAAGTTACTGCA 3943 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 ||||| ||||||| || | ||| || ||| |||||||| ||||||| | ||||| Sbjct 3942 TTTAATTGTGCCCACATTTTGTTGGTTGCTCTTGCGGTTACACGAATCCTTGAAGAGCAT 3883 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC--AGACATCGGCAGC- 118903 ||| || || || |||||| ||| |||| | || || || || || | ||| Sbjct 3882 GTACGGTGTGCCAGTCTCCACTTGTGACTCAATGATGGCAAACCAAAGGGATTG--AGCC 3825 Query 118904 -TG-GCACAGTGGCG-TTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960 || ||| || || ||||| ||||| | |||||| ||||| ||||| | ||||| Sbjct 3824 TTGATAACA----CGATTTGCTCGACCCTCCTTCTCGTATTTTGTATAGAGCTCCTCAAA 3769 Query 118961 CTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTG 119020 || |||||| | || | ||| ||||| ||| | ||||| | || ||||| | Sbjct 3768 CTTATCACCCCAAACATCAGCGAGTCCTGGACACTTGTGCGGGCACATCAGTGACCAATC 3709 Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 119080 || | || || |||||||| || | ||||| ||||| || || |||| ||||| Sbjct 3708 CTCATTGGCTTCCACGCGCTTCATAAACAAATCTGGTATCCACAGGGCATAGAACAGATC 3649 Query 119081 CCGACAGCGAGCTTCTTCATCCCC------CTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 |||| ||| ||| || | || || || ||| ||||| || || | Sbjct 3648 CCGAGCACGATGTTCCTCTTTGCCAGTGTTCTTCTTAAGA------TCCAAGAACTCAAA 3595 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAG 119190 || ||| | ||||| || || ||||| | || | | || ||| | || ||| Sbjct 3594 GACATCGGAATGCCAAGGCTCGAGGTAAATGGCAAAAGCTCCAGGTCTTTTGCCG-CCAC 3536 Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 |||| | ||||| | || ||||||||| | ||||| |||| | |||| || Sbjct 3535 CCTGATCCACATAACGTGCCACATTGTTAAATACTCTCAGCATAGGAACCAAGCCATTGG 3476 Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTT--ATTGGCTCTGACATCGTGGATGTGCAT 119308 || ||||| || || | ||| ||| | || ||||| | | || | | || Sbjct 3475 ATGTACCATTGGTGCCACTAAT-CGA-AGTTCCCTTGGCCCGAATGCAATGCACATTCAG 3418 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 ||||||||| ||||| |||||||||| ||| |||| | | | |||| || Sbjct 3417 ACCAATACCACCTGCTGACTTTGAGATCATCGCACACTGCTCCACAGATTTAAAGATTCC 3358 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 ||||| |||||| | | || ||| ||||| |||| ||||| | | || Sbjct 3357 CTCGATTGAGTCAGATACCATGGTGAGGAGAAAGCATGAAGACAGCTGAGGGCGTGTGGT 3298 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTA 119488 |||| ||| || ||||||| || || |||| | | || || | | | ||| Sbjct 3297 TGCAGCTGCGAAAAGTGTTGGTGAGGCATGTGTGAAGAAGCGTTCCGAAAGCAAATTGTA 3238 Query 119489 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 ||||||| ||| ||| || || || || |||||||| | || ||||| | ||| Sbjct 3237 AGTCTCCAGTGCGGAATCAATATCATCTCCATGTATACCGATGGCAACTCGCATCAGCAT 3178 Query 119549 GT 119550 || Sbjct 3177 GT 3176 >seq260 Length=58366 Score = 123 bits (136), Expect = 3e-23 Identities = 288/426 (68%), Gaps = 10/426 (2%) Strand=Plus/Minus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 ||||||| ||||| ||||||| ||| ||||| | |||||| |||| | || ||||| Sbjct 6888 AACCCGTACCGATACCTTCGGCTCCATTCACCAAAACCATCGGAATAATCGGAATATACC 6829 Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002 | | |||||||| | || ||||| | ||| | | || || || ||| || Sbjct 6828 ATACAGGTTCAATTTTCTGACCATCATCCACTTGATATTGCAACAAAGGATCATCCAACG 6769 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGTGAGTT--TTGTGAAGATGTACCTCGT--TTGA 179058 ||| | |||| || | | ||| || | ||||||| || || | | ||| Sbjct 6768 GATGATAGATGAGTCGGG--TTAATGGCGACATCATTGTGAAAATATAACGAGCACTTGC 6711 Query 179059 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 179118 || ||| |||||||| ||||||| || || |||||||||| || || || | ||| Sbjct 6710 -ACA-ATCCTTGCCACCGGTGAGACGAGTACCGAATTGACCACGGGGTTCCAGCAAATTA 6653 Query 179119 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGAC 179177 |||||||| || || | |||| | ||||| || ||||| || ||| || || || || Sbjct 6652 ATATTGTTAGATCCGACATAGTTCTGAGCCAAGTTTACAATTGTCATCTGC-AGAGAAAC 6594 Query 179178 TTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCAT 179237 ||| ||||||||||| |||||| | || ||||| | | | ||| || ||||| || | Sbjct 6593 TTCGCCGTGATGGTATGCCGACATCTCGGCCACGGAACCAGACAATTGAGCCACTTTGAC 6534 Query 179238 CTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAG 179297 ||| ||| ||| | || |||| | |||| ||||| || || |||||| || Sbjct 6533 CTCGCGTTTGTCGTTACGCTTAAAACACGTAAACATGACCTTCCTCTGACCAGGCTTTAG 6474 Query 179298 GCCGTC 179303 || || Sbjct 6473 ACCATC 6468 >seq19922 Length=1369 Score = 109 bits (120), Expect = 7e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 130012 CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071 ||| ||||| || || || |||||||| |||||||| || |||||||||||| || Sbjct 1218 CACAGCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAG 1159 Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGA 130130 ||| ||||| ||||| |||||||||| |||||| |||| | ||||| ||| ||||| Sbjct 1158 ACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAA-CTGCCGCTGAAGA 1100 Query 130131 AGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 |||| || || ||| || || |||| || ||||| ||||| Sbjct 1099 AGATGCCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAG 1056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618063620940520