Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2144 248 1e-60 seq19922 86.0 7e-12 >seq2144 Length=13752 Score = 248 bits (274), Expect = 1e-60 Identities = 1054/1640 (64%), Gaps = 40/1640 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| || ||||||||||| ||||| || || |||||||| | Sbjct 3169 CCACAGCACATGCTGATGCGAGTTGCCATCGGTATACATGGAGATGATATTGATTCCGCA 3228 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||||| ||| | | | || || | | |||| || || ||||||| || ||| Sbjct 3229 CTGGAGACTTACAATTTGCTTTCGGAACGCTTCTTCACACATGCCTCACCAACACTTTTC 3288 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 |||| || || | || || |||| ||||| || || ||| ||| Sbjct 3289 GCAGCTGCAACCACACGCCCTCAGCTGTCTTCATGCTTTCTCCTCACCATGGTATCTGAC 3348 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 |||||| | || |||| | | || | | |||||||| |||||||||| || || Sbjct 3349 TCAATCGAGGGAATCTTTAAATCTGTGGAGCAGTGTGCGATGATCTCAAAGTCAGCAGGT 3408 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 |||||||| || | | ||| | | ||||| | || ||| | || || ||| Sbjct 3409 GGTATTGGTCTGAATGTGCATTGCATTCGGGCCAAGGGAACTTCGATTAGTGGCACCAAT 3468 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 ||| ||| |||| | |||| ||||| | ||||||||| || || ||||| Sbjct 3469 GGTACATCCAATGGCTTGGTTCCTATGCTGAGAGTATTTAACAATGTGGCACGTTATGTG 3528 Query 104582 AATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 |||| | | |||| | |||| ||| || | || | || || ||||| ||||| | Sbjct 3529 GATCAGGGT-GGCGGCAAAAGACCTGGAGCTTTTGCCATTTACCTCGAGCCTTGGCATTC 3587 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-C 104696 ||| || | |||||| | || | ||| || | ||||| | |||| | Sbjct 3588 CGATGTCTTTGAGTTCTTGGATCTTAAGAAGAACACTGGCAAAGAGGA-ACATCGTGCTC 3646 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | ||||| |||| || || ||||| |||||| | || |||||| | || || | | || Sbjct 3647 GGGATCTGTTCTATGCCCTGTGGATACCAGATTTGTTTATGAAGCGCGTGGAAGCCAATG 3706 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 ||||||| || | || || ||||| || || ||| | |||| |||||| Sbjct 3707 AGGATTGGTCACTGATGTGCCCGCACAAGTGTCCAGGACTCGCTGATGTTTGGGGTGATA 3766 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA- 104875 ||||||| | || || ||||| |||||| | || ||||| || | | || | | || Sbjct 3767 AGTTTGAGGAGCTCTATACAAAATACGAGAAGGAGGGTCGAGCAAAT-CG-TGTTATCAA 3824 Query 104876 -GCTGCCGAT--GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 ||| | || | ||| || || | |||| ||| |||||||| ||||| ||| Sbjct 3825 GGCT--CAATCCCTTTGGTTTGCCATCATTGAGTCACAAGTGGAGACTGGCACACCGTAC 3882 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| | ||| || | ||||||| ||||| || ||| | ||| |||| || || Sbjct 3883 ATGCTCTTCAAGGATTCGTGTAACCGCAAGAGCAACCAACAAAATGTGGGCACAATTAAA 3942 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 | || | || || ||||| | || | | | | |||||||| ||||| || Sbjct 3943 TGCAGTAACTTGTGCACTGAAATTGTTGAGTATTCTGCACCAGATGAGATTGCTGTTTGC 4002 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 || | ||||| || |||||| | || || || ||| ||||| | || | | Sbjct 4003 AATTTGGCATCGATAGCTCTCAATATGTTCGTAACACCGGAG---AAGACGTACGACTTT 4059 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | || ||| | || || || || | ||| ||||||||| | |||| | || |||| Sbjct 4060 GTGAAGCTCAAAGAGGTCACCAAGATTGTTACCAAAAACTTGAACAAGATCATCGATATC 4119 Query 105173 AATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 |||| ||||| | ||| ||| ||||| || | ||||| ||||||||||| Sbjct 4120 AATTACTACCCTCTGCCCGAG---GCTAAGAAATCCAACTTAAGACATCGTCCAATTGGA 4176 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 105289 | || ||||| || || || |||| || ||| | || | | | ||| || Sbjct 4177 ATTGGAGTTCAAGGACTTGCAGATGCTTTGATTTTAATGCGGTATCCCTATGAGAGTGAT 4236 Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349 | ||| | ||| | ||||| || ||||| || | | ||| | || || Sbjct 4237 AAGGCGTGTCTTCTGAATCAACAGATATTCGAAACCATTTACTATGGCGCATTGGAAGCC 4296 Query 105350 AGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409 || | ||| |||| ||| ||||| | ||||| |||| |||||| ||||| || Sbjct 4297 AGCTGTGAGCTGGCTGAGAAAGATGGCACGTATGAGACCTATGAGGGAAGTCCAG-TTAG 4355 Query 105410 CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTGAGACCAAGCTTCACTACGACTGG 105466 |||||| | || || | |||||||||| ||||| ||| || || |||||| Sbjct 4356 CAAGGGTATTCTCCAGTATGATATGTGGAATAAGGT--ACCCACAAATCTCTGGGACTGG 4413 Query 105467 GAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCA 105526 | |||||||| || | || | || | ||||| ||| || || || ||| Sbjct 4414 GCGAAACTCAAGGAGAAGATAAGCAAGCACGGAGTGCGTAATTCTCTGCTTATCGCACCA 4473 Query 105527 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 105586 |||||||| || || || || || || ||||||||||||||| || ||||||||||| Sbjct 4474 ATGCCAACGGCATCGACAGCCCAGATAATGGGTAATAATGAATCTTTCGAACCCTACACT 4533 Query 105587 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 105646 | |||||||| ||| || || | ||||||||| | |||| || | ||| | Sbjct 4534 TCAAACATCTACACAAGACGAGTGCTGTCTGGAGAGTTTCAGGTTGTGAATCATCATTTG 4593 Query 105647 GTGGATGACCTCAAAGAGATTGGTC-TCTGGTCCAAGGATATGAAGGATCTCATGGT-GA 105704 || ||| || | || | ||| | | ||| | |||||||| ||| || | | Sbjct 4594 TTGCGTGATCTAACCGA-ACTGGACTTGTGGGATGATGATATGAAAAATCAAATAATCGC 4652 Query 105705 AAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCC---AAATGAAATTAAGAAGTTGT 105761 ||| |||| ||||| ||||| || | | ||||| ||||| | ||| | | Sbjct 4653 AAG-TCGTGGCTCCATACAAAACATCGAAAACATTCCTCAAAATGTGCGT--GAA-CTAT 4708 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 | || ||||||||||| | ||| || | ||||| ||||||||||| Sbjct 4709 ATAAGACCGTTTGGGAAATATCCGTAAAGTCCACAATCAAAATGGCAGCAGATCGTGGAG 4768 Query 105822 GCTTCATTGATCAAAGTCAA 105841 |||||||||||||||||| Sbjct 4769 CTTTCATTGATCAAAGTCAA 4788 >seq19922 Length=1369 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||||| ||||| || | || ||||| ||| || || ||||||||| || || Sbjct 1056 CTTTGGCGAGCGCATCATTGCCTTTGCTGCTGTCGAAGGCATCTTCTTCAGCGGCAGTTT 1115 Query 94857 CTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 |||| | || | ||||| |||||||| ||||| ||||| ||||| |||||| || | Sbjct 1116 -TGCGTCGATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGTCTTACCTTCTCGAATG 1174 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 |||| ||||| || ||||||||||| || || ||||| ||| Sbjct 1175 AGCTGATCTCCCGCGACGAGGGACTTCATTGCGATTTTGCTGTG 1218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582910355039080