Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19922 116 4e-21 seq260 116 4e-21 >seq19922 Length=1369 Score = 116 bits (128), Expect = 4e-21 Identities = 323/489 (66%), Gaps = 11/489 (2%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT- 74842 |||| |||||||| || | ||| || |||||||| ||||||||||||| ||| ||||| Sbjct 1181 ATCAGCTCATTCGAGAAGGTAAGACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATC 1122 Query 74843 GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTG 74902 | | || || || ||||||||||||||||||||| |||||||| | | ||| | Sbjct 1121 GACGCA-AAACTGCCGCTGAAGAAGATGCCTTCGACAGCAGCAAAGGCAATGATGCGCT- 1064 Query 74903 CGCGAACGGT----GCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGA 74958 ||| || | | || | || | ||||||| | ||||||| || || || || || | Sbjct 1063 CGCCAAAGTTTGCCGCCTTCGAGGAGATCCAAGACAGAGCCCAATCTGCCTTACGCTTCA 1004 Query 74959 CCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGA 75018 | || || | || || || || | ||||||| | || | |||||| | | Sbjct 1003 CAGCGGGCATCGTTTCAATGGCATTGAAGAGGTAGTCGCGCTGATGCGGATCCCGAATGT 944 Query 75019 GCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACG 75078 |||| || | | |||| | ||||| || | ||| || |||| | Sbjct 943 AAGTGTCGATGAGCACGCTGTACATTTCCGAGTGGACATTCTCCATGGCAATCTGGAAGC 884 Query 75079 CGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCT--TTGAAAAATTCATGTCGATATT 75136 | || || | || ||||||| || || || |||| |||| || | | | ||| Sbjct 883 CATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGGCTGAAGCGCTC--GACAAGATT 826 Query 75137 CTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCG 75196 ||| | || |||||||| |||||||| || ||||||| || | || ||||| || Sbjct 825 CTCATTAACAATGCCGTCAGAGGCGGCAAAGAAAGCCAAAACATGTGAAATGAAGTGACG 766 Query 75197 CTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGAC 75256 ||||| ||| || ||| |||| || ||| |||| | | ||| | ||||| || Sbjct 765 CTCATTGTCTGTTAGTCGAGCCCAGTCGGTCATGTCCTTGGATAGATCCACTTCCTCCAC 706 Query 75257 CGTCCAGAA 75265 |||||||| Sbjct 705 GGTCCAGAA 697 >seq260 Length=58366 Score = 116 bits (128), Expect = 4e-21 Identities = 208/299 (70%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||| |||||||||||| | ||||| ||||||||||| Sbjct 6733 GTGAAAATATAACGAGCACTTGCACAATCCTTGCCACCGGTGAGACGAGTACCGAATTGA 6674 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||| || |||| | || | ||||| | || ||| |||| ||||||||||| ||| Sbjct 6673 CCACGGGGTTCCAGCAAATTAATATTGTTAGATCCGACATAGTTCTGAGCCAAGTTTACA 6614 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || || | || || || || || |||| | ||| |||||| | || Sbjct 6613 ATTGTCATCTGCAGAGAAACTTCGCCGTGATGGTATGCCGACATCTCGGCCACGGAACCA 6554 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAG--GTTCTTCTTGAGGCAGGCATAAATCA 117542 | || |||||||| || | || ||| | ||| ||| | || | | | || | Sbjct 6553 GACAATTGAGCCACTTTGA--CCTCGCGTTTGTCGTTACGCTTAAAACACGTAAACATGA 6496 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGATGTC 117600 |||| | ||||| ||||| ||||||||| | | | |||| || ||||| | | |||| Sbjct 6495 CCTTCCTCTGACCAGGCTTTAGACCATCCACTA-GACAGGGAATGGAACGTTCGTTGTC 6438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546887212106600