Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2274 168 8e-37 seq355 143 3e-29 seq7704 131 2e-25 seq260 113 5e-20 >seq2274 Length=37031 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| | || |||||||| || || | ||||| ||| || Sbjct 30158 AATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATC 30217 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| | ||||| || || |||||||||||||| ||||||||||| || Sbjct 30218 TGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCA 30277 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || ||||| ||||| || ||||||| ||| || || | ||||| || Sbjct 30278 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTACAA 30337 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 30338 CATCCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 30385 >seq355 Length=9390 Score = 143 bits (158), Expect = 3e-29 Identities = 154/203 (76%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 27391 AGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTT 27450 ||||||||| | |||||| |||||||| || || | || |||||||| || ||| | Sbjct 9190 AGAAATATTG--AAAATGCAGATCTTTGTGAAAACATTGACTGGCAAGACCATCACTTTG 9247 Query 27451 GAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 || ||||| | || | ||||| ||| ||||||||||||| || ||||||||||| Sbjct 9248 GAAGTTGAACCTTCCGACACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGT 9307 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || ||||| ||||||||||| ||||| || || ||||| || ||||||| ||||| Sbjct 9308 ATCCCCCCAGATCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACT 9367 Query 27571 CTAGCAGACTATAATGTCCAAAA 27593 || | ||||| || |||| || Sbjct 9368 CTGTCGGACTACAACATCCAGAA 9390 >seq7704 Length=29863 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || || ||||| || ||||||||||| || | Sbjct 18350 ATGCAGATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 18409 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || || || ||||||||||| || |||||||||||||| ||| Sbjct 18410 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 18469 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| |||||| | || |||| || || || | || || || Sbjct 18470 CAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACTCTCTCCGATTACAAC 18529 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || | || | || | || ||||| ||||| Sbjct 18530 ATTCAGAAAGAGTCAACATTGCACTTGGTGCTCCGCCTTCGTGGTGG 18576 >seq260 Length=58366 Score = 113 bits (124), Expect = 5e-20 Identities = 235/350 (67%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 32053 AAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCG 32112 || ||||| || |||| || | |||||| ||| |||| || || |||||||| | Sbjct 6537 AAAGTGGCTCAATTGTCTGGTTCCGTGGCCGAGATGTCGGCATACCATCACGGCGAAGTT 6596 Query 32113 TCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAAC 32172 || || ||| || ||||| ||| | |||||||||| |||||| | || || | || Sbjct 6597 TCTCTGCAGATGACAATTGTAAACTTGGCTCAGAACTATGTCGGATCTAACAATATTAAT 6656 Query 32173 TTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGC 32232 || || || || ||| || || || || || ||| |||||||||||||| ||| || Sbjct 6657 TTGCTGGAACCCCGTGGTCAATTCGGTACTCGTCTCACCGGTGGCAAGGATTGTGCAAGT 6716 Query 32233 TCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGAC 32292 | ||||| || ||||| | | || | || || || | | |||| ||| Sbjct 6717 GCTCGTTATATTTTCACAATGATGTCGCCATTAACCCGACTCATCTATCATCCGTTGGAT 6776 Query 32293 GATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGT 32352 ||| | || | | || | | ||||| |||||| | || || || | || | | Sbjct 6777 GATCCTTTGTTGCAATATCAAGTGGATGATGGTCAGAAAATTGAACCTGTATGGTATATT 6836 Query 32353 CCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 ||| | |||||||| | |||||||| || || ||||| ||||| ||||| Sbjct 6837 CCGATTATTCCGATGGTTTTGGTGAATGGAGCCGAAGGTATCGGTACGGG 6886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569967736125040