Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7704 149 5e-31 seq102 149 5e-31 >seq7704 Length=29863 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || |||||||| || |||||||| Sbjct 18350 ATGCAGATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 18409 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 18410 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 18469 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || ||||| ||||||||||| | || | |||||||||||| Sbjct 18470 CAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACTCTCTCCGATTACAAC 18529 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || || || ||||| | || | || ||||| Sbjct 18530 ATTCAGAAAGAGTCAACATTGCACTTGGTGCTCCGCCTTCGTGGTGG 18576 >seq102 Length=36553 Score = 149 bits (164), Expect = 5e-31 Identities = 207/288 (72%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 135474 TGTGGAACGCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGCG 135531 |||||||| | ||||| ||| || | || ||| ||||| ||||||||||| |||| Sbjct 13055 TGTGGAACTCTGCACAGTTGCAACTGGTCAGGGAG--GGCAAGATGCACGGATTCCTGCG 12998 Query 135532 CATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACA 135591 |||||| ||||| || || || | || ||| ||| | || | ||||| | | | Sbjct 12997 CATGTACTGGGCGAAGAAAATTCTCGAGTGGACTGAGACTCCCGAGCAGGCGTTGGAGTA 12938 Query 135592 CGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGG 135651 | ||| | | |||||| | ||||| | |||||||| ||| | ||||| ||||| || Sbjct 12937 CTGCATACTACTCAATGATAAGTACAGCCTGGATGGACGGGATCCCAATGGGTACGTCGG 12878 Query 135652 TTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGG 135711 || |||||||| || | || || || ||||| || |||||||||||| | | ||||| Sbjct 12877 CTGCATGTGGTCAGTTGGTGGCGTTCATGATCAGGGCTGGAAGGAGCGCGACATCTTTGG 12818 Query 135712 CAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 |||||| || || ||||||||| | || || | | |||||| |||| Sbjct 12817 CAAGATACGATACATGAACTATCAAGGCTGCAAGCGCAAATTTGATGT 12770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434657084715840