Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq41861 167 1e-36 >seq41861 Length=755 Score = 167 bits (184), Expect = 1e-36 Identities = 494/752 (66%), Gaps = 25/752 (3%) Strand=Plus/Plus Query 66141 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66200 |||| |||||| || |||||||||||||| ||||| || || || | || ||| Sbjct 17 CCGATGGGCCGCAGCGTCGAAATCTACGGCCCGGAATCGTCCGGTAAAACCACCCTGACG 76 Query 66201 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGC---TGCCTACATCGACGCT 66257 || || | | | ||| ||| | || || ||||| | ||| | |||||| || Sbjct 77 CTGCAGGTGATCGCC---GCCGCGCAGCGCGAAGGCAAAACCTGTGCGTTCATCGATGCC 133 Query 66258 GAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTG 66317 |||||| | ||||| ||| || || ||| ||| || || || |||||||||| || Sbjct 134 GAGCACGCGCTGGATCCTATCTATGCGAAGAAGCTGGGCGTCGATATCGACAACCTGCTG 193 Query 66318 GTGGTTC-AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC 66376 || | | |||||||||| ||||||||||| ||||| ||| ||| || | || Sbjct 194 -TGCTCCCAGCCGGACACCGGCGAGCAGGCTCTGGAAATCTGTGATGCGCTGACCCGATC 252 Query 66377 TGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCT 66436 |||| | | | || || ||| || || |||||||| || |||| || || | Sbjct 253 CGGCGCGGTTGACGTCATCATCGGCGATTCCGTGGCGGCGTTGACGCCGAAGGCGGAAAT 312 Query 66437 CGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCAT 66496 |||||| || ||||| || ||| | || || |||||| | ||| ||||| || Sbjct 313 CGAAGGTGAAATCGGCGATTCGCACATGGGGTTGGCGGCGCGCATGATGAGCCAGGCGAT 372 Query 66497 GCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTT 66556 ||| ||||| |||||| | | | |||| || ||| | ||| |||||||| | Sbjct 373 GCGTAAGCTGGCCGGCAACCTGAAAAATGCCAATACCCTGCTGATCTTCATCAACCAGAT 432 Query 66557 GCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAACGAGACCACCACGGGCGGCAA 66613 || ||| || || ||| | ||| |||| || ||||| || || || || Sbjct 433 CCGTATGAAAATTGG---TGTGATGTTCGGCAACCCG---GAAACCACTACCGGTGGTAA 486 Query 66614 GGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGA 66673 ||| ||| |||||| || || || || ||||| ||||||| |||| | || || || Sbjct 487 CGCTCTGAAGTTCTATGCTTCGGTGCGTCTGGATATCCGTCGTATCGGCGCCATCAAAGA 546 Query 66674 AGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCC 66733 ||||| || | || |||| | ||||| ||||| || | || ||||| | || | Sbjct 547 GGGCGACGAAGTGGTGGGCAGCGAAACCCGCGTGAAAGTGGGGAAAAACAAAATCGCTGC 606 Query 66734 GCCGCACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGA 66793 |||| | | || |||||| || ||||||| || |||||| | | ||| Sbjct 607 GCCGTTCAAACAGGCTGAGTTCCAAATCATGTACGGCGAAGGCATCAACAGCCGTGGCGA 666 Query 66794 ACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGT-GAAGAAGTCGGGCGCCTGGTTCA--- 66849 || |||| |||| |||| ||| || | ||| ||| | |||||||||| || Sbjct 667 GCTGGTCGATCTGGGCGTGAAGCACAAGATGATCGAAAAAG-CCGGCGCCTGGTACAGCT 725 Query 66850 AGTACGGGGACAAGAACGTCGCCCAGGGCAAG 66881 | |||| || |||| ||| ||||||||| Sbjct 726 ATAACGGCGAGAAGA---TCGGTCAGGGCAAG 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240818841641100