Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq6480 96.9 3e-15
>seq6480
Length=6706
Score = 96.9 bits (106), Expect = 3e-15
Identities = 244/369 (66%), Gaps = 8/369 (2%)
Strand=Plus/Plus
Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG-AACCCTGATGACAGAAGGATCGT 34542
|| || ||||| | || ||||||||| | | || || || ||| || | ||| |
Sbjct 465 GATCAACTGCAACAGGTTATCGACACCAT-ACGCAACAATCCCTCTGATCGACGCATCAT 523
Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602
||| | || ||||| || |||| | || |||||| || || ||||||||| |||
Sbjct 524 AATGAGTGCATGGAATCCAGTGGATATACCCAAGATGGCTCTGCCGCCGTGCCACTGCCT 583
Query 34603 CTGCCAATTCTACGTCGCGAA------TGGGGAGCTGTCCTGCCAGCTCTATCAACGATC 34656
|| || || ||| | | ||| || || || || ||||| ||||| ||
Sbjct 584 GGCGCAGTTTTATGTCTCACAGTCTCGTGGTGAACTCTCGTGTCAGCTGTATCAGCGCAG 643
Query 34657 GGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACAT 34716
| |||||||| | || || || || |||||||| || || |||||||| |||||
Sbjct 644 TGCGGACATGGGACTCGGCGTTCCCTTTAACATTGCATCCTATGCACTGCTCACCTACAT 703
Query 34717 GATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCA 34776
|||||| |||||| |||| ||||| || | ||||| || ||||| ||||| ||
Sbjct 704 GATCGCCCATGTCACTGGGTACAAACCTGGTGACTTTGTGCACACCTTGGGCGATGCTCA 763
Query 34777 TATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTT 34836
| |||| ||| || | |||| || | || || || ||||| || |||||
Sbjct 764 TGTCTATTCGAATCATGTAGAGCCACTAAAGGAGCAACTAAGCCGCGAGCCACGCCCGTT 823
Query 34837 CCCCCAGCT 34845
||| ||||
Sbjct 824 TCCCAAGCT 832
Score = 96.9 bits (106), Expect = 3e-15
Identities = 244/369 (66%), Gaps = 8/369 (2%)
Strand=Plus/Minus
Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559
|||| ||| ||||| || ||||| || || || | || |||| | || |||
Sbjct 832 AGCTTGGGAAACGGGCGTGGCTCGCGGCTTAGTTGCTCCTTTAGTGGCTCTACATGATTC 773
Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619
|||| ||| ||||| ||||| || ||||| | || ||||| |||| ||||
Sbjct 772 GAATAGACATGAGCATCGCCCAAGGTGTGCACAAAGTCACCAGGTTTGTACCCAGTGACA 713
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| || || |||||||| || || || || | |||
Sbjct 712 TGGGCGATCATGTAGGTGAGCAGTGCATAGGATGCAATGTTAAAGGGAACGCCGAGTCCC 653
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA------TTCGCGACGTAG 6733
||||| | || ||||| ||||| || || || || ||| | | ||| ||
Sbjct 652 ATGTCCGCACTGCGCTGATACAGCTGACACGAGAGTTCACCACGAGACTGTGAGACATAA 593
Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793
|| || ||| ||||||||| || || |||||| || | |||| || |||||
Sbjct 592 AACTGCGCCAGGCAGTGGCACGGCGGCAGAGCCATCTTGGGTATATCCACTGGATTCCAT 533
Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTT-CCGCTTCAAGGTGTCGATCACGTACTG 6852
|| | ||| | ||| | || ||| || || || | | ||||||||| || | ||
Sbjct 532 GCACTCATTATGATGCGTCGATCAGAGGGATTGTTGCGT-ATGGTGTCGATAACCTGTTG 474
Query 6853 CAGCTGGTC 6861
||| || ||
Sbjct 473 CAGTTGATC 465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447993067140240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |