Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6480 96.9 3e-15 >seq6480 Length=6706 Score = 96.9 bits (106), Expect = 3e-15 Identities = 244/369 (66%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG-AACCCTGATGACAGAAGGATCGT 34542 || || ||||| | || ||||||||| | | || || || ||| || | ||| | Sbjct 465 GATCAACTGCAACAGGTTATCGACACCAT-ACGCAACAATCCCTCTGATCGACGCATCAT 523 Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602 ||| | || ||||| || |||| | || |||||| || || ||||||||| ||| Sbjct 524 AATGAGTGCATGGAATCCAGTGGATATACCCAAGATGGCTCTGCCGCCGTGCCACTGCCT 583 Query 34603 CTGCCAATTCTACGTCGCGAA------TGGGGAGCTGTCCTGCCAGCTCTATCAACGATC 34656 || || || ||| | | ||| || || || || ||||| ||||| || Sbjct 584 GGCGCAGTTTTATGTCTCACAGTCTCGTGGTGAACTCTCGTGTCAGCTGTATCAGCGCAG 643 Query 34657 GGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACAT 34716 | |||||||| | || || || || |||||||| || || |||||||| ||||| Sbjct 644 TGCGGACATGGGACTCGGCGTTCCCTTTAACATTGCATCCTATGCACTGCTCACCTACAT 703 Query 34717 GATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCA 34776 |||||| |||||| |||| ||||| || | ||||| || ||||| ||||| || Sbjct 704 GATCGCCCATGTCACTGGGTACAAACCTGGTGACTTTGTGCACACCTTGGGCGATGCTCA 763 Query 34777 TATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTT 34836 | |||| ||| || | |||| || | || || || ||||| || ||||| Sbjct 764 TGTCTATTCGAATCATGTAGAGCCACTAAAGGAGCAACTAAGCCGCGAGCCACGCCCGTT 823 Query 34837 CCCCCAGCT 34845 ||| |||| Sbjct 824 TCCCAAGCT 832 Score = 96.9 bits (106), Expect = 3e-15 Identities = 244/369 (66%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||| ||||| || ||||| || || || | || |||| | || ||| Sbjct 832 AGCTTGGGAAACGGGCGTGGCTCGCGGCTTAGTTGCTCCTTTAGTGGCTCTACATGATTC 773 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 |||| ||| ||||| ||||| || ||||| | || ||||| |||| |||| Sbjct 772 GAATAGACATGAGCATCGCCCAAGGTGTGCACAAAGTCACCAGGTTTGTACCCAGTGACA 713 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| || || |||||||| || || || || | ||| Sbjct 712 TGGGCGATCATGTAGGTGAGCAGTGCATAGGATGCAATGTTAAAGGGAACGCCGAGTCCC 653 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA------TTCGCGACGTAG 6733 ||||| | || ||||| ||||| || || || || ||| | | ||| || Sbjct 652 ATGTCCGCACTGCGCTGATACAGCTGACACGAGAGTTCACCACGAGACTGTGAGACATAA 593 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || || ||| ||||||||| || || |||||| || | |||| || ||||| Sbjct 592 AACTGCGCCAGGCAGTGGCACGGCGGCAGAGCCATCTTGGGTATATCCACTGGATTCCAT 533 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTT-CCGCTTCAAGGTGTCGATCACGTACTG 6852 || | ||| | ||| | || ||| || || || | | ||||||||| || | || Sbjct 532 GCACTCATTATGATGCGTCGATCAGAGGGATTGTTGCGT-ATGGTGTCGATAACCTGTTG 474 Query 6853 CAGCTGGTC 6861 ||| || || Sbjct 473 CAGTTGATC 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447993067140240