Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7704 156 3e-33 seq355 87.8 1e-12 seq2274 86.0 4e-12 >seq7704 Length=29863 Score = 156 bits (172), Expect = 3e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||||||||||||||| || || |||||||| || || || | || Sbjct 18350 ATGCAGATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 18409 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| || ||| ||||||||||| | || |||||||| Sbjct 18410 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 18469 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| ||||| ||| ||||||| | |||||| | |||||||||| Sbjct 18470 CAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACTCTCTCCGATTACAAC 18529 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || |||||||| ||||| || || || Sbjct 18530 ATTCAGAAAGAGTCAACATTGCACTTGGT 18558 >seq355 Length=9390 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 || || | ||||||||||| || || ||||| | || || || || |||||| | |||| Sbjct 9192 AAATATTGAAAATGCAGATCTTTGTGAAAACATTGACTGGCAAGACCATCACTTTGGAAG 9251 Query 23660 TTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 |||| | | ||||| |||| ||| | || | ||||| ||||| || ||| | Sbjct 9252 TTGAACCTTCCGACACCATTGAGAATGTGAAGGC-TAAAATCCAAGACAAGGAGGGTATC 9310 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || |||||||| |||||| | || || ||||| || || ||||| || | || ||| | Sbjct 9311 CCCCCAGATCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACTCTG 9370 Query 23779 GGCGATTACAACATACAAAA 23798 || |||||||| || || Sbjct 9371 TCGGACTACAACATCCAGAA 9390 >seq2274 Length=37031 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||| | || || || || ||||| | || || || | Sbjct 30156 AAAATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCA 30215 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| | || | || || ||||| || ||| | || ||||| Sbjct 30216 TCTGATACCATTGAGAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGTATTCCTCCAGA 30274 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || || ||||| || ||||| || | |||||| | || || Sbjct 30275 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTA 30334 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 30335 CAACATCCAGAAGGAGTCAAC 30355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337811588378036