Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq65 143 6e-29 seq2274 140 8e-28 seq355 129 1e-24 >seq65 Length=15579 Score = 143 bits (158), Expect = 6e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | |||| || |||| |||| || || ||| |||| || ||||| ||| |||| || Sbjct 13642 ATTAATTGGTGATGACCAAATTTATAATGTAATTGTTACAGCTCATGCATTTATTATAAT 13583 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | ||||| || |||| || || || || ||||||||||| ||||||||||| Sbjct 13582 TTTTTTTATAGTTATACCAATTATAATTGGGGGATTTGGAAATTGATTAGTTCCTTTAAT 13523 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | || ||||| ||||| |||||||| | | || ||||||||||| |||||||| || Sbjct 13522 ATTAGGGGCTCCCGATATAGCTTTTCCTCGAATAAATAATATAAGTTTCTGATTACTTCC 13463 Query 7716 GCCT 7719 ||| Sbjct 13462 CCCT 13459 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| ||||||||||||||||| || || || ||||| || | Sbjct 13054 TTCTGGGTGTCCAAAAAATCAAAATAAATGTTGATAAAGAATTGGGTCACCTCCCCCGGC 13113 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 || |||||||| ||||| ||||| | |||||||||| Sbjct 13114 AGGGTCAAAAAATGACGTATTTAAATTACGGTCAGTTAAAA 13154 >seq2274 Length=37031 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || || |||| ||||| || | | ||| | ||||| Sbjct 30370 AGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 30311 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || || |||||||| |||||||| Sbjct 30310 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 30251 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || ||||| || || | ||||| || || ||||| ||| Sbjct 30250 TGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACCTCCAAGGTGATGGTC 30191 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || || | ||| | |||||||| Sbjct 30190 TTGCCAGTCAAGGTCTTGACGAAAATCTGCATTTT 30156 >seq355 Length=9390 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || ||| | ||||| || |||||||| || ||||| || Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || || ||||| |||||||||||||| || ||||||| || Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 |||||||| || | ||| || || || ||||| |||||||| ||||| ||||| | || Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211 Query 225706 ACTTGCATTTT 225716 | |||||||| Sbjct 9210 ATCTGCATTTT 9200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191796769598498