Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq12148 170 1e-37 seq48009 141 6e-29 >seq12148 Length=678 Score = 170 bits (188), Expect = 1e-37 Identities = 240/337 (71%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 97202 CGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTTCGAATACGAGTCTGATCAACGCGTGCA 97261 |||||||| ||| || ||| | | || ||||| | || |||||||| ||||| | Sbjct 1 CGCGCCCAGTCCGCGCCGTCGTGCCGGCCGGTTCGGAGGCGCGTCTGATCCACGCGCGAC 60 Query 97262 AGAGAAGCCAGTGAGCGCATCATCAGCTGGTGGCTCGGCATCTCAAGGCTAAAAACCAAT 97321 || || ||||| |||||||| | ||| | || |||||||| ||||| || | || Sbjct 61 AGTGACGCCAGCATACGCATCATGATCTGCTCGCCGGGCATCTCCAGGCTGAAGATCAGC 120 Query 97322 ACGGGCTTATCGTTACGAACTGCGGCATTTTCGACGAGATTCATCGCAAACGTGGTCTTC 97381 || || || || | | ||||| |||||| || ||||| || || ||||| ||| Sbjct 121 ACCGGTTTCTCCTGGGTCATCGCGGCGTTTTCGCACAGGTTCATGGCGAAGGTGGTTTTC 180 Query 97382 CCCATAGATGGGCGGGCGGCGACAATGATGAGATCGGACGACTGAAGCCCTGCCGTCTTC 97441 ||||| ||||| ||||||||||| ||||| ||||||||| || | || || || ||| Sbjct 181 CCCATCGATGGACGGGCGGCGACGATGATCAGATCGGACTTTTGCATGCCCGCGGTTTTC 240 Query 97442 TTATTGAGATCGGTAAATCCGGTATCAAGTCCCGTTACACCATCATGCGGTCGCTGAAAC 97501 || ||||| || | | |||||||| | || || || || |||||||| ||||| || Sbjct 241 TTGTTGAGGTCCTGATAGCCGGTATCGACCCCGGTCACGCCGTCATGCGGCTGCTGATAC 300 Query 97502 AACTCTTCTATGCGAGATACCGTTGCATCGAGAATGC 97538 | || ||| ||||| || || || | || || |||| Sbjct 301 AGCTGTTCGATGCGCGAGACGGTGTCTTCCAGGATGC 337 >seq48009 Length=653 Score = 141 bits (156), Expect = 6e-29 Identities = 329/490 (67%), Gaps = 12/490 (2%) Strand=Plus/Minus Query 63518 GCTCGCCATCCCGGTGCCCACCTGCCATTTACTGCCTGCTTCAACGGTGGTGTTAGTGGC 63577 |||| ||| ||| |||| | || ||| ||||| || |||||| | | |||| Sbjct 495 GCTCACCAGGCCGTTGCCGAGGCGCAGTTTGCTGCCCAGCTCGACGGTGTCGCTGGTGGA 436 Query 63578 CGGTTGCAGAGCAAAGTTAAGCCCGGACTGACCATCGGGACGATAGGACAGCTCGTTAAT 63637 ||| |||||| | | ||| || |||| ||| || ||| |||||||| || ||||| || Sbjct 435 CGGCTGCAGACCGATGTTCAGGCCGGCCTGGCCGGTGGGGCGATAGGAGAGTTCGTTGAT 376 Query 63638 GGTCGGCGTTTCAAATCCCCTCCCGGCAGAGAGGTAAACGTTCCACTGCGGCGTCATGGC 63697 |||||| |||||||| || | ||||| ||||| |||||||||||| ||| | || Sbjct 375 GGTCGGGGTTTCAAAGCCGCGGCCGGCTGAGAGATAAACGTTCCACGCCGGATTGATTTT 316 Query 63698 ATACTTCAGCGCTGCCGCCGGAAGCCACTTGTGATAGC--TCGCTTCGCCGCTATCATCA 63755 ||| | |||| || ||| ||||||| ||| |||| | ||| |||||| || || Sbjct 315 ATAGTAGAGCGAGCCCATCGGCAGCCACTGGTGGTAGCGTTTGCT--GCCGCTGTCGTCG 258 Query 63756 CCATTTTTACCTACAACATAACGATCGTTGGAATCAAACCATACCGAGCTATAGCGCGCC 63815 || || | || ||| | || || || | |||| ||| |||||| Sbjct 257 CCGTTGCGCGGCGTGAGGTAGTAGTCGGTCGAGTCGAAGCTAACCGTGCTGTAGCGCAGG 198 Query 63816 CCGGCGTCCAGC-CCCAGGGCTGAGGTGAGCTGCCAGTGCGTTTGAATGTAGGGATCGAG 63874 |||||||||||| |||| || | || || |||||| ||||| | ||| ||||| || Sbjct 197 CCGGCGTCCAGCGTCCAGTGC-GGCGTCAGTTGCCAGGAGGTTTGCAGGTAAGGATCCAG 139 Query 63875 GTTCCACATCAGGTTACGTTCGTTACGTCGCATATCACCTTTGGTGCCGAGATCGTAAAC 63934 |||||| || |||| ||||| || ||| || ||||| |||| | || || Sbjct 138 GTTCCAGATGCGGTTTTTCTCGTTGCGCCGCTGGTCGCCTTTCTCGCCG---TAGTCCAC 82 Query 63935 ---GCCGTTCTGATAAACAAAGTTCTCATAGCCTTTGCGCTGTTCGGTCATCGCCTCGTA 63991 ||||| | || |||||| ||| | || | || | |||||||| | || || Sbjct 81 TGTGCCGTCTCGCAGAATAAAGTTTTCAAACCCCTGCCGGCGGTCGGTCATGGTTTCATA 22 Query 63992 ATCAAGGCCG 64001 ||| || ||| Sbjct 21 ATCCAGACCG 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330705353768122