Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq42801 156 3e-33 seq7704 127 1e-24 seq2274 122 6e-23 seq355 91.5 1e-13 >seq42801 Length=1186 Score = 156 bits (172), Expect = 3e-33 Identities = 506/776 (65%), Gaps = 35/776 (5%) Strand=Plus/Minus Query 5752 TTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCCCATCCAAATAGACCCCCC 5811 |||||| ||| | | |||||||||||||||||||| ||||| ||||| || ||| Sbjct 777 TTCATGCTGTTGAGAATATCGCCGTTGTCCGCGTCGATCTCCCAGGAGAATAGGCCGCCC 718 Query 5812 AGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGACCTCTCGTCGTCGTAGGTG 5871 ||| ||| | | || || || || |||||| | | || | | ||||| ||||| Sbjct 717 AGCTGCTTATCCAACACGTACTTGCCTTTGGCCTGCCCCGAGCGGGCATCGTCAAAGGTG 658 Query 5872 ACGAGATCGTCGTTGT--GGT----ACACGTAGGGCGCTTGCGCCACTCCGTCGTA---- 5921 | |||||| || || ||| ||||||| ||||||| |||| ||||||| Sbjct 657 ATCAGATCGCCGGTGGTAGGTTTGAACACGTAAGGCGCTTCCGCCGTGGCGTCGTAGGTG 598 Query 5922 -------ATTCG--GGTTGGGATACCGGTTCGTGATGTCTTTGTAGTCCACGACACCGTT 5972 | ||| | | || || || | | ||| | ||||||||||| ||||| Sbjct 597 TACTGCCACTCGCCGCTCATGA-ACTGGCTGGCGATCTGGCGGTAGTCCACGATGCCGTT 539 Query 5973 TTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAAGGGATTGTTGTTGGTGAT 6032 ||||||| || || || || || ||||| ||||| ||||| ||| ||||||| | Sbjct 538 CTCCCAGGTGCCTTTGACCGGCCCGGTGGCGGTGCCGGTGAACGGAATGTTGTTCTGGTA 479 Query 6033 GTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACGCCCACCACCAATTTGTTTGG 6092 | || | || ||| || | ||| |||||||| ||| || || | ||| || Sbjct 478 GCCGTTCACCCCGGTCCAACCGCGGCCATACATGGCGGTGCCGACGACGATCTTGCCCGG 419 Query 6093 GTTCACGCTCTGATTGAGCAG-GCGTTGGACGGCGAACGCGGTGGTGTACTTTTCGGTG- 6150 || |||| ||| ||||| || || ||| || | | |||||||| ||||| Sbjct 418 CTTGACGCCCTGCGCCAGCAGCGCATT-CACGCCGTTCACCGTGGTGTA---GGCGGTGT 363 Query 6151 --GGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGATCGGTGTTAGACC--A 6206 || |||| | ||||| | ||| | ||||| | ||||| | | | ||| | | Sbjct 362 CCGGTTTCCCGGCCGGCGCATTCAGCGCGGTCTGATGCCCCAGGT--TTTTCAGATCGAA 305 Query 6207 GGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATACTCCTGCACCGCACC 6266 ||| || | ||| ||||| |||| | ||| || ||| ||| | |||| | | Sbjct 304 GGCGCCGTAGAAGTCGTAGCTCATCAGGAAGATGTGAACCATCGAGATCTGCGCGACGTT 245 Query 6267 GTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTTGTGAGCAGATACTT 6326 |||| | || || || ||||| | ||| ||||||||||| || ||| |||||| Sbjct 244 GTATGCCACCTTGTCGATCTTGTCCTTGCCGGCGCTGATGGCGGAGGTCAGCTCATACTT 185 Query 6327 GCGACCCGTGCGAGTCTCCAGACCGTCCAGCATGGACCTGAGGTCGCCCAAGAGCGCTTG 6386 ||| || || | | ||| |||||||| | || || || || ||| Sbjct 184 GCGGCCGGTTTCCGCCGACAGCTGATCCAGCATCGCCCGCAGTTCTTTCATCAGCAGCAC 125 Query 6387 ATAGGTGACGCCGTCGACTGTGACGTTTCCTAAGGCAGGATTGGCTCCCTTGCCTCCGGG 6446 ||| || | ||||| ||| | | | || | || ||||| || ||||| || || Sbjct 124 ATAAGTTTCCCCGTC--CTGAG-GGCTGCCCAGATTCGGGTTGGCGCCTTTGCCGCCCGG 68 Query 6447 AAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCCAGAAATTCTT 6502 |||||||| || || ||||||||||||||||||||||| || | ||| || |||| Sbjct 67 GAATTCCCAGTCGATATCCACGCCGTCGAAGAACTTCCAGGTCTGCAGGAACTCTT 12 >seq7704 Length=29863 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || ||| || || ||||||||||||| ||| ||| | || || Sbjct 18559 CACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATCTTC 18500 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || ||||||||||||||||||||||||| ||| | ||||| || ||| Sbjct 18499 CAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 18440 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || | ||||| || | | ||| ||||| | || || ||||| Sbjct 18439 AATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 18380 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || |||||||| ||||| Sbjct 18379 ACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 >seq2274 Length=37031 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| || | || ||| | || || Sbjct 30368 CACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTC 30309 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || || ||||||| |||||||||||||| ||| | ||| ||||| ||| Sbjct 30308 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 30249 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | ||||| || | | |||||||||| || || ||||| Sbjct 30248 GATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACCTCCAAGGTGATGGTCTT 30189 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| ||||| || ||||| Sbjct 30188 GCCAGTCAAGGTCTTGACGAAAATCTGCAT 30159 >seq355 Length=9390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 || ||||||||||| || | || || | || ||||||||||| ||||| || || Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT 44269 | |||||||||||||| || | ||| ||||| || || || ||||| | | Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271 Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 |||||||||| | ||| || |||| || || ||||| || || | || ||||| ||| Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211 Query 44330 ATTTGCAT 44337 || ||||| Sbjct 9210 ATCTGCAT 9203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359779511661339