Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq162 118 2e-21 seq25 95.1 3e-14 seq20 95.1 3e-14 seq13 91.5 3e-13 seq108 89.7 1e-12 >seq162 Length=508180 Score = 118 bits (130), Expect = 2e-21 Identities = 301/456 (66%), Gaps = 4/456 (1%) Strand=Plus/Minus Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618 ||||| | | || ||| || || ||||||||||| ||||||||| | |||||| || Sbjct 426205 GGATTGTGATTGTAAATCTTGGTGGACCAACCGGTGCCAATACCATCAGCACCATTCACT 426146 Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATAC 281678 |||| | || ||||| |||| ||| || | |||||||| || | ||||||||| Sbjct 426145 AAAACCATTGGTATAATCGGTATATACCACTGGGGTTCAATCTTTTGGCCATCATCAACT 426086 Query 281679 AAATACTTCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGT 281738 || | || | |||||| | | | ||| | ||| ||| || || | Sbjct 426085 TCGTATGTGAGCAATGGATCATCGGCAGGGTGGAATATGAGTCTCGTTAATGGCGACATT 426026 Query 281739 TTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAAC 281798 ||||| ||||| | || ||||| |||||||||||||| || | || || ||| Sbjct 426025 AAAGTGAAAATATAACGAGCGCTCGCACAATCTTTACCACCCTGTAGACGCGTACCGAAC 425966 Query 281799 TGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTG 281858 ||||| |||| | | ||||| ||||| || || || | || |||| ||| Sbjct 425965 TGACCACGCGGCTCGAGTAAATTAATATTATTTGAGCCAACATAGTTTTGCGCCAAATTG 425906 Query 281859 ACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAA 281918 || || || |||| || || | ||| || || || |||||| ||| || ||| || Sbjct 425905 ACTATGGTGGCCTGCAGTGACATCTCTCCATGATGGTAGGCGGACATTTCAGCCACAGAA 425846 Query 281919 CCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAA--AGCGCAATATA 281976 ||| || || || || ||||| || | | ||| || ||||| || || ||| Sbjct 425845 CCAGACAATTGCGCAACTTTCACTTCACGTTTGTCGTTACGCTTGAAACAGGTGAACATA 425786 Query 281977 ATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGA 282012 ||||| ||||| |||||| |||||||| |||| Sbjct 425785 --ACTTTGCGTTGGCCAGGCTTAAAACCATCCACGA 425752 >seq25 Length=2595154 Score = 95.1 bits (104), Expect = 3e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| Sbjct 668084 CTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 668025 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 668024 AGCCCCACGTTGGGC 668010 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 580379 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 580438 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 580439 CCCCACGTTGGGC 580451 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 527205 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 527264 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 527265 CCCACGTTGGGC 527276 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 582084 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 582143 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 582144 CCCACGTTGGGC 582155 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 582944 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 583003 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 583004 CCCACGTTGGGC 583015 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 666736 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 666795 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 666796 CCCACGTTGGGC 666807 >seq20 Length=2842481 Score = 95.1 bits (104), Expect = 3e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 || ||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct 1353716 CGATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 1353775 Query 165765 CGAGCCCCACGATGGGC 165781 ||||||||||| ||||| Sbjct 1353776 CGAGCCCCACGTTGGGC 1353792 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1354175 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1354234 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1354235 CCCCACGTTGGGC 1354247 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 535420 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 535361 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 535360 CCCACGTTGGGC 535349 >seq13 Length=3210178 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 78837 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 78896 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 78897 CCCCACGTTGGGC 78909 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 83531 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 83590 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 83591 CCCACGTTGGGC 83602 >seq108 Length=866800 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 367814 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 367873 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 367874 CCCACGTTGGGC 367885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057748480622360