Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7 219 4e-52 seq154 100 3e-16 >seq7 Length=4380649 Score = 219 bits (242), Expect = 4e-52 Identities = 482/714 (68%), Gaps = 14/714 (2%) Strand=Plus/Plus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 ||||| ||| | | || | ||| || |||||||||||||| | | ||||| ||| ||| Sbjct 4094550 CCCAGCTCGACTAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAA 4094609 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| || || | | ||| || | ||| || || || ||| |||||| || ||| Sbjct 4094610 TTCATACCAATTAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACA 4094669 Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 ||||| ||| || | || |||||| | || | ||| | | ||||| |||| Sbjct 4094670 GCTTCGGAAATGATTTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAAC 4094729 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 |||| |||||||||||| ||||| | |||||||||| ||| || || || ||||| Sbjct 4094730 ATCAAACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAAC 4094789 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || || || ||||| || ||||| || | ||| || |||| || || ||| Sbjct 4094790 GTTAAGCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTG 4094849 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCTTT 17136 || || ||||| || || | |||||| || |||| ||||| | | | | || |||| Sbjct 4094850 AAAAAAATACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTT 4094909 Query 17137 GTTACG-AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 | | | |||||| | |||| || || || |||||| | | ||||||||| | Sbjct 4094910 G--AGGAAATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAA 4094967 Query 17196 TGGCCT----TAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 | || | |||||| || || | |||| | | || | ||||| |||||||| | | Sbjct 4094968 TAGCATTGAATAAATAGTTCCTTTGTTTC--GAA--TCCTTAATATATGTATCGATTAAT 4095023 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 | || ||||||||||| || | ||||||||| || || |||||||| || || || || Sbjct 4095024 ATACTATACATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGT 4095083 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | | ||| || ||| ||||||||| ||| ||| || || || || || Sbjct 4095084 GCCTCTGTAACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCA 4095143 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 || ||||| ||||| || |||| || ||||||| ||| | || || Sbjct 4095144 TCAGATGCGGCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAG- 4095202 Query 17432 ACGCG-CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAA 17484 ||| | ||| || | | |||||| || | ||||||||| || |||||||| Sbjct 4095203 ACGTGCCCAATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAA 4095256 >seq154 Length=581927 Score = 100 bits (110), Expect = 3e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATA-CA 119919 ||||| || || |||||||| | || ||||| ||||||||||||||| || || | Sbjct 256007 CCCACATAACCATTGGGATCTCTGCCGTCTAAGCTGTATTTATCGTTTAAATAAATGGCT 256066 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 | || ||||| ||| ||||| | |||||||||||| ||||| ||||| ||| | Sbjct 256067 GTTTCT-AACGCCGATTCTGGAGTATTTGACCATTCCAGTATCTTTTTTGCCCAATACTT 256125 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCA 120036 ||| | | || |||||||| |||||||| |||| ||| | ||| | || ||||| Sbjct 256126 ACGAAGAAACCCGTGCATTTTGCCTTCACGCACCAGTTGTAATTGAGACGCATTCCA 256182 Score = 93.3 bits (102), Expect = 4e-14 Identities = 236/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATA-CA 119919 || || || ||||| ||||| ||||||| || |||||||| || || | || || Sbjct 259872 CCAACATAGCCGTTTGGATCTATTCCATCCAAACTATATTTATCATTCAAAAATATTGCA 259931 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 | || | ||| |||||| || | |||||||| || ||||| ||||| ||||| Sbjct 259932 GTTTCTAGA-GCAACTTCAGGTGTAGCCGACCATTCCAAAATCTTTTTTGCCCAATACAT 259990 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 ||| | | ||||||||||||||||| || | || || | || || |||||||| | Sbjct 259991 ACGCAGAAAACCATGCATTTTACCTTCTCGCAACAACTGTATCTGCGCTGCGTTCCACAG 260050 Query 120040 GGGATCGTGTGTACGGGCGTGTTCTAAACTATACGTATCGTAT-AGATAGGGT-CGAGTA 120097 ||| ||||| || || || || ||||| | || |||| ||| | || || || Sbjct 260051 ATCATCATGTGTTCGAGCCTGCTC-AAACTCAGCCAAT-GTATAAGAAGGCGTGCGTTTA 260108 Query 120098 TCCCGTCGATGTTCGTCTAACGTACGTAAAGCCCACGGATGCGTCGACGTAATAGA--AT 120155 || |||||| || || ||||| ||||||| || || | | || | || Sbjct 260109 TCTTTTCGATGATCTTCCAACGTTTTAGCTGCCCACGCAT--GTAAGCCTTTTAAACTAT 260166 Query 120156 CGTATCGTTTATTATAATAACAAAAGTTATCGGATAATTCCCGTCGTAC 120204 |||| ||| || |||||||| || ||||| | ||||| || ||||| Sbjct 260167 CGTAATGTTCGTTGTAATAACAGAAATTATCCGCCAATTCACGCCGTAC 260215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517509552948960