Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7 212 6e-50 seq154 100 3e-16 >seq7 Length=4380649 Score = 212 bits (234), Expect = 6e-50 Identities = 477/707 (67%), Gaps = 21/707 (3%) Strand=Plus/Plus Query 16026 TAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA 16085 |||| || | ||| || |||||||||||||| | ||||| | | |||||| || || | Sbjct 4094561 TAAC-AAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAA 4094619 Query 16086 TAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAA 16145 | | ||| || | ||| | ||||| |||| ||| || || ||| ||||| || Sbjct 4094620 TTAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAA 4094679 Query 16146 TGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG 16205 |||| || | |||| | | || | || | | |||| |||||| | ||| | Sbjct 4094680 TGATTTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATG 4094739 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 |||| || ||||| || || ||||||| ||| || || |||||||| ||||| || | Sbjct 4094740 CGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAG 4094799 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATAT 16323 ||||| || ||||| || | |||||| |||| ||||| | | | |||| || || Sbjct 4094800 GCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAA--AAAAT 4094857 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG-AA 16382 ||| || |||| |||||| || |||| ||||| | | | || || | | | || Sbjct 4094858 ACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTT-TGAGGAAA 4094916 Query 16383 TCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT--- 16439 |||| || |||| || || || | |||| | ||||||||| || || | Sbjct 4094917 TCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGA 4094976 Query 16440 -TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 |||| | || || | |||| || ||| | ||||| ||||| || | || ||| ||| Sbjct 4094977 ATAAATAGTTCCTTTGTTTC--GA--ATCCTTAATATATGTATCGATTAATATACTATAC 4095032 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 ||||| || || | |||||| || || || |||||||||||||| || || ||||| | Sbjct 4095033 ATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTA 4095092 Query 16559 ATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 | ||| || ||| |||||||| | | |||||||| || ||||| ||| ||| Sbjct 4095093 ACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCG 4095152 Query 16619 GCAAAAAACGCCAATATGTGCTTAATGAAAT---ATTTTTCGTCAGATGTAAGAATATGC 16675 |||||||| || |||| ||| ||||||| || | |||| || ||| | Sbjct 4095153 GCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCA---GTGAGACGTGCC 4095209 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 ||||| | | |||||| || | ||||||||| || |||||||| Sbjct 4095210 CAATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAA 4095256 >seq154 Length=581927 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATA-CA 119072 ||||| || || ||||||||| | |||||||| ||| ||||||||||| || || | Sbjct 256007 CCCACATAACCATTGGGATCTCTGCCGTCTAAGCTGTATTTATCGTTTAAATAAATGGCT 256066 Query 119073 GACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACAT 119132 | || ||||| ||| ||||| || |||||||||||| ||||| ||||| ||| | Sbjct 256067 GTTTCT-AACGCCGATTCTGGAGTATTTGACCATTCCAGTATCTTTTTTGCCCAATACTT 256125 Query 119133 ACGTAAATACCCGTGCATTTTACCCTC 119159 ||| | | ||||||||||||| || || Sbjct 256126 ACGAAGAAACCCGTGCATTTTGCCTTC 256152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511378779987040