Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq45 143 2e-29 >seq45 Length=1794600 Score = 143 bits (158), Expect = 2e-29 Identities = 486/742 (65%), Gaps = 20/742 (3%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 |||||||||||| | |||| |||| | |||| ||| || ||||| | | || ||| Sbjct 1450023 TTAAACAGCCATTTCCATTGAAATTTTTGGGTATGGATTGTAGTTGATAAGTTCAAAGTC 1449964 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCA-AAT--CTAAGTGTTGGAAA 101649 |||| || ||||||||| ||| || || ||| |||| | | ||||| Sbjct 1449963 CGTAAAAGTAAAATCTTCAATGCATTT--CATCTCACGCTTAATAACTAATT-TAGGAAA 1449907 Query 101650 CGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTG 101709 || | ||| | ||||| | ||| | | || || || || |||| ||| | ||| Sbjct 1449906 CGCACGAGGTTTACGCGTTAGCTGTTCTGTTAGCGCCTCGATATGATTGTTATAAACGTG 1449847 Query 101710 AGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCAT 101769 ||||| |||| ||| |||| || || || || |||| ||| | ||||||||||| Sbjct 1449846 TGCATCGCCTAAAGTGTGGACGAAGTCCCCTGGTCGGAGATCAGTAATGTGAGCAATCAT 1449787 Query 101770 GCAAGTTA--AAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 | || | || | | || | | ||||| || ||||| || ||||| ||||| ||||| Sbjct 1449786 ATAGGTAAGCAACGCGTAT-GAT-GCAATATTGAATGGTACACCTAATCCCATGTCAGCA 1449729 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATAC- 101886 | ||| || | |||||| || | || ||||| ||| ||||||| || || Sbjct 1449728 CTACGTTGGTATAATTGACAAGACAACTCTCCATTGGCAACAAAAAATTG-TGCAAGACA 1449670 Query 101887 ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACAT 101946 ||||||||| |||| |||||| ||| || || | |||||| ||| |||||| || Sbjct 1449669 ATGACAAGGGGGCAGAGCCATTTGAGGTATATCGACAGGATTCCACGCAGACATTATAAT 1449610 Query 101947 CCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCC 102006 | || ||| | || || || | || || | ||||| | | | ||| || ||||| Sbjct 1449609 ACGTCGATCATTTGGATTGTTTCTGATTGTGTTAATCACTTCCTGAAGTTGATCCACTCC 1449550 Query 102007 TTCTCCTTTATAATCG--CGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064 || ||||| ||| | ||| || | || | || || ||||| | ||| ||| Sbjct 1449549 CTCACCTTTGTAACTGTCTTTGCAATTCC--TGTACTTGGCCCCAAAATGACGCCATTGA 1449492 Query 102065 AATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAA 102124 || || || || || || ||||| ||||| || | | |||| ||| ||| || ||| Sbjct 1449491 AAACCGTAAACTGGACCTAGATCACCTTCTTCGCGATTGGAAAACCCACATTTGTCCAAA 1449432 Query 102125 AATGATCTAGAT--CCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGC 102182 || ||| | | | ||| ||||||| ||||| | | || || ||| Sbjct 1449431 AA--CTCTCGTTTACTATTTCCATCCCATATGTGGATATTTTTTTCTTGAAGTATTTTAG 1449374 Query 102183 TGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTC 102242 ||| || || | |||||||| || ||||||| | || ||| ||| ||||||| Sbjct 1449373 CGTCTGTTTGACCATGAACAAACCACAGCAATTCTTCAGCGACCGCTCGCCAGAATACTC 1449314 Query 102243 TCTTAGTAGTTAAAAGTGGAAA 102264 ||| |||||||| | |||||| Sbjct 1449313 GCTTTGTAGTTAATAATGGAAA 1449292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361226667882572