Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq71 448 6e-121 seq7 315 8e-81 >seq71 Length=1348405 Score = 448 bits (496), Expect = 6e-121 Identities = 1248/1888 (66%), Gaps = 46/1888 (2%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||| | ||||||||| || | | | ||| || ||||| |||| || ||||| ||| Sbjct 494640 TTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCC 494699 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| || || |||| || ||||| || ||| || || ||| ||| | || Sbjct 494700 GTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGC 494759 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || | || ||||| | ||||| |||||||||||||| || || | ||||||||| Sbjct 494760 TCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCC 494819 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT- 53036 ||||| ||| || || || ||| ||||||| ||| || || | |||| | |||| Sbjct 494820 ATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGT-ATATG 494878 Query 53037 CTTCTGGAAGGTTT--GTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 ||| | | ||||| | || || ||||| |||| || | ||||| |||| || || Sbjct 494879 TTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCAT 494938 Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTT 53153 ||||||| ||| || |||||| | | | | ||| || || |||| || |||| Sbjct 494939 ATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAG-TGATGATTGACAACTT 494997 Query 53154 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 53213 | ||||| || || | || | || || |||||||| || |||||||| | |||| Sbjct 494998 GGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACT 495057 Query 53214 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 53273 ||||||| |||| |||||| || || || ||||| ||||| ||||| | ||| || | Sbjct 495058 CATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGT 495117 Query 53274 TTCTAAGACCGTATGTT--CTGATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGATCC 53329 | | | ||| ||||| | ||||| || || | ||| ||| ||||| ||||| Sbjct 495118 TGCGTACACC--ATGTTGCTTTATTTTCTCCTTCAATTCGGT--CCAGTTCCAGAGATCA 495173 Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389 | || |||||| ||||| || ||| | || ||| || Sbjct 495174 GTTGGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCA 495233 Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 ||||| ||||| | || | || ||||| | ||||||||| || || ||||| || || Sbjct 495234 TATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAG 495293 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 ||||| |||||||| || | | ||| | | ||| || || || ||||| || Sbjct 495294 TAAATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAA 495353 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | | ||| || ||||| || || ||||| | |||||||| || || | ||||| | Sbjct 495354 CGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGC 495413 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 ||| || | | || || || | ||||||| ||| | ||||| ||||| || | Sbjct 495414 AAATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAA 495473 Query 53630 TTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC- 53685 || | | |||||| | |||| | | | |||| ||| ||| | | ||| Sbjct 495474 TTACGCGTAACAATTTTTGTGACTTCTTTAAGCCGTTT---AAAGTCATACGTTTTATCT 495530 Query 53686 --TATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCA 53743 | | ||| ||||||||||||| || || || | ||| ||||| |||||||| | | Sbjct 495531 GGTGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCGGGT 495590 Query 53744 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 53803 | | ||||| | || || || || | ||||||||| || || || || | ||| || Sbjct 495591 GCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTGC 495650 Query 53804 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATC 53863 |||||||||||| | || || ||||| ||||| | ||| | || || || || || | | Sbjct 495651 TGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTACC 495710 Query 53864 TGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTA---TTATAGATTTGTATCTC 53920 || ||||| ||||| || ||| | ||| ||||| || | ||| | | || Sbjct 495711 TGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTAACCTTCT-TATTAGCACGTC 495768 Query 53921 TTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT 53980 |||| ||| ||| ||| ||| || ||||| || ||||| || | | || Sbjct 495769 -CTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGTAAA 495827 Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTC 54037 || ||||| | || |||||||| | |||||| ||| ||||| |||| || ||| | Sbjct 495828 CCCGGACACTTATGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCGACACGTCGC 495884 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 54096 ||||| ||||| || ||||| | || ||| |||| |||||| | | ||| || || || Sbjct 495885 ATAAATAGATCCGGTATCCACA-AGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTT 495943 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || ||||| || || | ||| | ||| | | || || | |||||| ||||||| || Sbjct 495944 GCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATA 496003 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 |||| | | || || || || || || ||||| | || | || ||||| Sbjct 496004 GATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATT 496063 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGC 54275 | | ||||||| |||||| | | ||||||||| | ||||| || |||| | | || Sbjct 496064 AAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAG- 496122 Query 54276 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 | || | || || || | | | ||| | ||| || || ||||| ||| ||||| Sbjct 496123 TGCCTTTCGCGCGTATGCAATGCACATT--CAAACCAATACCGCCTGCAGATTTGGAGAT 496180 Query 54334 TAATGCGCATCGTTTTAACG-TATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 ||||| || | | | || | | | | || || || || ||| |||| |||| ||| Sbjct 496181 CAATGCACAGTGATGTGCCGATGTGA-AAATACCGTCAATTGAATCGTCCACCATGGTAA 496239 Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 | ||||| || |||| ||| | | | || | ||| |||| || || || | Sbjct 496240 GCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGG 496299 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512 | || ||||| | |||||||| | ||||| || || || || | || ||||| Sbjct 496300 CATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTT 496359 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 ||| || || | || || |||||||||||||| || || | ||||| || ||| Sbjct 496360 CACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTGC 496419 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 || | || ||||| || || ||| | ||||||||||||||||| || || || Sbjct 496420 CATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAACCAA 496479 Query 54633 AGTCTCGTTCGTAAATAATAACTGAGTT 54660 |||| || || || || ||| | ||||| Sbjct 496480 AGTCACGGTCATAGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 315 bits (348), Expect = 8e-81 Identities = 403/553 (73%), Gaps = 3/553 (1%) Strand=Plus/Plus Query 24117 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 24176 ||||||| ||||||||||||||||||||| || || ||||||||||||| |||| Sbjct 4094718 AAATGTTGAAACATCAAACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGC 4094777 Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 || ||||||||||| | || ||||||| ||||| ||||||||||| || || |||||| Sbjct 4094778 TCATTGGAAAACGTTAAGCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCA 4094837 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA 24296 || |||| || ||||| ||||| || || ||||| ||||| | | ||| ||| | Sbjct 4094838 AAACTTCCACTGAAAAAAATACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAG 4094897 Query 24297 CCGGCG--CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 24353 || || | | | | |||| | |||||||| ||||| ||||| |||| Sbjct 4094898 TTTGCCGACTTTGAGGAAATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGC 4094957 Query 24354 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413 || || || |||||||| || | |||||| ||| || ||| |||| ||||||||| Sbjct 4094958 ATCGTTTCAATAGCATTGAATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCG 4095017 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 || || | |||||||||||| ||||| | ||| || || || ||||||||||| |||||| Sbjct 4095018 ATTAATATACTATACATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAA 4095077 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533 || | ||||| |||| || || || || |||||||| ||||||| ||||| || Sbjct 4095078 CAACGTGCCTCTGTAACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACA 4095137 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 24593 || || ||| || |||||||| || ||||| ||| || |||| ||| | Sbjct 4095138 ATACCATCAGATGCGGCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCA 4095197 Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 || || |||||||| ||||||||||| | ||||||||| || ||||||||||| Sbjct 4095198 GTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAAC 4095257 Query 24654 GATGCCTCTGCCT 24666 || || ||||||| Sbjct 4095258 GACGCTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593680247290560