Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq10 100 2e-16 >seq10 Length=3877145 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 ||||||||||| ||| | || || ||||| ||||| ||||| || || ||||| Sbjct 2844359 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 2844418 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || |||| || ||| || |||||||| | ||| |||| Sbjct 2844419 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCAGAT 2844478 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | | |||||||| || |||||||||||||| || || |||||||| Sbjct 2844479 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTAC 2844538 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| ||||| ||||| |||| | || |||| || || Sbjct 2844539 AACATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 2844588 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||||||||||| ||||| ||||| || ||||| | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | |||| ||||||| || ||||| ||| | ||| ||||||| Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCAA 2844937 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || || || ||||| ||| |||| || || || |||| ||||| Sbjct 2844938 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAAC 2844997 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || ||||| || || |||||| |||| || || Sbjct 2844998 ATCCAAAAGGAGTCAACACTTCACTTGGTATTGCG 2845032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428306912237660