Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq48 84.2 2e-11 >seq48 Length=1730007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| |||||||||| || || || ||||| ||| || || || | Sbjct 776671 AATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATC 776730 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || |||| |||||| || ||||| ||| | || |||||| Sbjct 776731 TGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCA 776790 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | ||||| || || ||||||||||||||| || || |||| ||||| Sbjct 776791 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 776850 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || |||||||| || || || || ||||||| || Sbjct 776851 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 776886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410768903302808