Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 208 8e-49 seq48 127 2e-24 seq10 107 2e-18 >seq7 Length=4380649 Score = 208 bits (230), Expect = 8e-49 Identities = 389/564 (69%), Gaps = 8/564 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || |||||||| ||||| || ||||| ||||| || || || || | | || | Sbjct 4095270 AGGCAGAAGCGTCGTTTTGGACAGTTGAGGAAGTGGATCTTTCTAAAGATATGGATGATT 4095211 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| || | | ||||| || || ||||||||| ||||| | |||||||| |||| Sbjct 4095210 GGGCACGTCTCACTGACAATGAACGGCATTTCATCTCACACGTATTAGCCTTTTTTGCCG 4095151 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | || || || || || |||||| | || || || ||| ||||||||| || || Sbjct 4095150 CATCTGATGGTATTGTTAATGAGAATTTAGTTGAACGATTCAGTCAGGAGGTCCAAGTTA 4095091 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || || ||||| || ||||| || || |||||||||||||| || ||||||| Sbjct 4095090 CAGAGGCACGTTGTTTCTATGGATTTCAAATTGCTATGGAGAACGTGCATTCCGAAATGT 4095031 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 || | | ||||| || || | |||| | | | | | ||| || || | Sbjct 4095030 ATAGTATATTAATCGATACATATATTAAGGATTCGAAACAAAGGAACTATTTATTCAATG 4094971 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 | || || |||||||| ||| |||| | ||||| || ||||| || ||||| || Sbjct 4094970 CTATTGAAACGATGCC-TGCCGTAAAGCGTAAGGCAGATTGGGCACTTGCTTGGATTTCC 4094912 Query 117014 GGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 || || ||| ||| || || || | | || || || || || || | || || Sbjct 4094911 -TCAAAGTCGGCAAACTTTGGTGAACGTGTAATTGCATTTGCAGCTGTGGAAG--GTATT 4094855 Query 117073 CTTTTC--GGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| || ||||| || | || || ||||| || ||||| || | ||||| ||| Sbjct 4094854 TTTTTCAGTGGAAGTTTTGCGTCGATCTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGC 4094795 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 | || || ||| ||||| ||||| | ||||||||||||||||| || || || ||| Sbjct 4094794 TTAACGTTTTCCAATGAGCTAATCTCACGAGACGAGGGTCTGCATTGTGATTTCGCATGT 4094735 Query 117191 TTGCTGTTCAAGCATTTGGTGCAG 117214 ||| |||| | |||||| | ||| Sbjct 4094734 TTGATGTTTCAACATTTGATACAG 4094711 >seq48 Length=1730007 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| | || || || ||||||||| | || ||||| |||| Sbjct 776671 AATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGA-GCCAT 776729 Query 40749 C-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | |||| | | ||| |||| | ||||||| ||||||||||| ||||| | || | Sbjct 776730 CTGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATC 776789 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || | |||| ||| || ||||| |||| || | |||||| | |||||||| Sbjct 776790 AACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACA 776849 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| |||||| | || || ||| | |||||||| Sbjct 776850 ACATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 776886 >seq10 Length=3877145 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || ||||| |||||||| | || || ||| | Sbjct 2844359 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 2844418 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | ||| | || | || |||| |||||||| || |||||| | || Sbjct 2844419 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCAGAT 2844478 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | |||| || || ||||| ||||| |||| || ||| | ||| ||| Sbjct 2844479 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTAC 2844538 Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||||||| | || || ||| Sbjct 2844539 AACATCCAGAAGGAGTCTACACTTCAT 2844565 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | ||||| ||||| || || | || || ||| | | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | ||| ||||| ||| ||||||||||| || ||| | || || Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAA-TTCAAGACAAAGAGGGTATTCCCCCAGATCA 2844936 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | ||| ||||| || |||| |||| ||||| | ||||||||| Sbjct 2844937 ACAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAA 2844996 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| |||||| | || || || | || ||||| Sbjct 2844997 CATCCAAAAGGAGTCAACACTTCACTTGGTATTGCG 2845032 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || ||||| || || | || |||||| | || Sbjct 2845274 ATGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCC 2845333 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | || || ||||| ||||| | || || Sbjct 2845334 GACACCATCGAAAACGTT-AAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCA 2845392 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || || ||||| |||| |||| || || | ||| ||||| Sbjct 2845393 ACAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAA 2845452 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||| | || || ||| | || ||||| Sbjct 2845453 CATCCAAAAGGAATCAACCCTTCATTTGGTATTGCG 2845488 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | ||||| ||||||||||| | || || || | || Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | ||||||| || || || || ||||| | || || Sbjct 2844650 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAA 2844709 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||||||| |||| || | ||||| || |||||| || Sbjct 2844710 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 2844769 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 || |||||||| |||| | ||| |||| | ||||| Sbjct 2844770 ATTCAGAAGGAATCCACATTACATTTAGTTCTACGCTT 2844807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515183314982720