Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq45 154 1e-32 >seq45 Length=1794600 Score = 154 bits (170), Expect = 1e-32 Identities = 405/609 (67%), Gaps = 12/609 (2%) Strand=Plus/Minus Query 97027 CGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAA 97086 ||||| ||||| ||||| || || || || ||||| ||||| ||| ||||| |||||| Sbjct 1449893 CGCGTTAGCTGTTCTGTTAGCGCCTCGATATGATTGTTATAAACGTGTGCATCGCCTAAA 1449834 Query 97087 GTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGA 97146 ||||| | || || || || | |||||| | || || |||||| | || | | Sbjct 1449833 GTGTGGACGAAGTCCCCTGGTCGGAGATCAGTAATGTGAGCAATCATATAGGTAAGCAAC 1449774 Query 97147 GAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAAC 97206 | || ||||| || || || || |||| |||||| ||||| | ||| ||||| Sbjct 1449773 GCGTATGATGCAATATTGAATGGTACACCTAATCCCATGTCAGCACTACGTTGGTATAAT 1449714 Query 97207 TGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATAC-ATGACAGGGGGGCAA 97265 ||||| || | || ||||| ||| |||| || ||| || |||||| ||||||| Sbjct 1449713 TGACAAGACAACTCTCCATTGGCAACAAAAAATTG-TGCAAGACAATGACAAGGGGGCAG 1449655 Query 97266 CGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGG 97325 ||||||| || | ||| | |||||| ||| |||| | || | || ||| |||| Sbjct 1449654 AGCCATTTGAGGTATATCGACAGGATTCCACGCAGACATTATAATACGTCGATCATTTGG 1449595 Query 97326 GTT-TGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAAT 97384 || | | || || || ||||| | | || | |||||| || || || || ||| Sbjct 1449594 ATTGTTTCTG-ATTGTGTTAATCACTTCCTGAAGTTGATCCACTCCCTCACCTTTGTAAC 1449536 Query 97385 TGTGCTT--AAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGG 97442 ||| || || ||| || | || |||||||| | |||||| || || ||||| || Sbjct 1449535 TGTCTTTGCAATTCCT--GTACTTGGCCCCAAAATGACGCCATTGAAAACCGTAAACTGG 1449478 Query 97443 TCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGAT-- 97500 || || || |||||||| | || | || ||| || || ||| | || | | Sbjct 1449477 ACCTAGATCACCTTCTTCGCGATTGGAAAACCCACATTTGTCCAAAAA--CTCTCGTTTA 1449420 Query 97501 CCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCT 97560 | |||| ||||||| ||||| | | | || ||| ||| ||| || || Sbjct 1449419 CTATTTCCATCCCATATGTGGATATTTTTTTCTTGAAGTATTTTAGCGTCTGTTTGACCA 1449360 Query 97561 CTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAG 97620 | |||||||| ||||||||| | || ||| ||| ||||||| ||| || ||||| Sbjct 1449359 TGAACAAACCACAGCAATTCTTCAGCGACCGCTCGCCAGAATACTCGCTTTGTAGTTAAT 1449300 Query 97621 AGAGGAAAA 97629 | |||||| Sbjct 1449299 AATGGAAAA 1449291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346760450332040