Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq45 143 4e-29 seq558 136 6e-27 seq10 136 6e-27 seq48 120 5e-22 seq154 96.9 5e-15 >seq45 Length=1794600 Score = 143 bits (158), Expect = 4e-29 Identities = 386/583 (66%), Gaps = 13/583 (2%) Strand=Plus/Minus Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 |||||||| ||| | ||||||| || | | | || | || || |||| | | Sbjct 1449866 ATATGATTGTTATAAACGTGTGCATCGCCTAAAGTGTGGACGAAGTCCCCTGGTCGGAGA 1449807 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAAC---TATAACTAGCAACATTAAATGGT 205497 | ||| | || ||||||||||| || || ||| ||| | |||| ||| |||||| Sbjct 1449806 TCAGTAATGTGAGCAATCATATAGGT-AAGCAACGCGTATGAT--GCAATATTGAATGGT 1449750 Query 205498 ACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTA 205557 |||||||| ||||| ||||| | ||| || | |||||| | | | | ||| | Sbjct 1449749 ACACCTAATCCCATGTCAGCACTACGTTGGTATAATTGACAAGACAACTCTCCATTGGCA 1449690 Query 205558 ATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATA 205617 | || ||||||| ||| |||||||||||| || | | |||| | | ||| | | Sbjct 1449689 A---CAAAAAATTGTGCAAGACAATGACAAGGGGGCAGAGCCATTTGAGGTATATCGACA 1449633 Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatA 205677 |||||||| || | | ||| ||| || | | || || ||| | ||| | || || Sbjct 1449632 GGATTCCACGCAGACATTATAATACGTCGATCATTTGGATTGTTTCTGATTGTGTTAATC 1449573 Query 205678 ATATGTGTTAATTGATCAAATCCTTGA--TTTGTATAATTTGTATCCATATCAATATATT 205735 | | | |||||| | ||| | | |||||| | | | | | || || | || | Sbjct 1449572 ACTTCCTGAAGTTGATCCACTCCCTCACCTTTGTA-ACTGTCTTTGCAATTCC-TGTACT 1449515 Query 205736 TAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795 | || ||||||||||||||||||||||| ||||||||||||| ||||||||||| | || Sbjct 1449514 TGGCCCCAAAATGACGCCATTGAAAACCGTAAACTGGACCTAGATCACCTTCTTCGCGAT 1449455 Query 205796 CATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattc 205855 ||| |||| ||| | | | | | | | | |||| ||||||| || ||||| Sbjct 1449454 TGGAAAACCCACATTTGTCCAAAAACTCTCGTTTACTATTTCCATCCCATATGTGGATAT 1449395 Query 205856 ctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAA 205915 ||| | || || || || | | ||| ||| | |||||| | ||||||||| Sbjct 1449394 TTTTTTCTTGAAGTATTTTAGCGTCTGTTTGACCATGAACAAACCACAGCAATTCTTCAG 1449335 Query 205916 CAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 | | ||| ||| || | | ||||| || ||||||||||| Sbjct 1449334 CGACCGCTCGCCAGAATACTCGCTTTGTAGTTAATAATGGAAA 1449292 >seq558 Length=79715 Score = 136 bits (150), Expect = 6e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 |||||||||| || |||| || || || || ||||| || ||| | ||| ||||| | Sbjct 66180 CAATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTT 66239 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || || | ||| ||||| |||||||| ||||| || ||||| |||| Sbjct 66240 CGGATACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGATC 66299 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| | | |||||||| ||||||||||| |||||| |||| ||||| | ||| || | Sbjct 66300 AACAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACA 66359 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 | ||||| || || || || || || || || | ||| | |||||||| ||| || Sbjct 66360 ACATTCAGAAGGAGTCTACATTACACTTAGTCCTTCGTCTTAGAGGTGGTGCTAAGAA 66417 >seq10 Length=3877145 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || ||| | ||| |||| | Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||||||||| ||||| || ||||| |||||| Sbjct 2844650 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAA 2844709 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||| || |||||| | || ||| | || |||||| Sbjct 2844710 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 2844769 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || || ||||| ||| |||| ||||| |||||||| Sbjct 2844770 ATTCAGAAGGAATCCACATTACATTTAGTTCTACGCTTACGTGGTGGTAT 2844819 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || ||||| || ||| | ||| ||||| | | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| || ||||| || ||||||||||| ||||| ||||| || || ||||| Sbjct 2844878 GATACAATCGAAAACGTTAAAGCA-AAAATTCAAGACAAAGAGGGTATTCCCCCAGATCA 2844936 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | ||||| || || || ||||| ||||| | || ||||| || || || Sbjct 2844937 ACAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAA 2844996 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || ||||| || ||| | || |||||||| Sbjct 2844997 CATCCAAAAGGAGTCAACACTTCACTTGGTATTGCGTCTCCGTGGTGGTAT 2845047 >seq48 Length=1730007 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || ||| |||| || || || || || ||||| | || || Sbjct 776671 AATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATC 776730 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct 776731 TGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCA 776790 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||||||||| || ||| |||| || || || || || Sbjct 776791 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 776850 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | |||||||| || ||| | || |||||||| Sbjct 776851 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCGTCTTCGTGGTGGTAT 776901 >seq154 Length=581927 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 202759 AACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGG 202818 |||||||||||| || |||||||| |||| |||| |||| | ||||||||| ||||| Sbjct 259708 AACATCAAATTTTCGCTGACATCCTTTATAATTCATGTATCGCACTTTACCAAAAATTGG 259767 Query 202819 TCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCC 202869 || ||| |||| || |||||| | || | |||||||||||||||||| Sbjct 259768 TCGTTCAGCCCATCCTTGATCATGCACTCCGCCAATTGACCACATACATCC 259818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755403382489600