Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq48 138 1e-27 seq558 116 3e-21 seq10 98.7 9e-16 >seq48 Length=1730007 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||||||||| |||| || ||||| ||||| |||||||| ||| Sbjct 776900 TACCACCACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGG 776841 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||| || | |||||||| ||| |||| | |||||| ||||| || | Sbjct 776840 ACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTG 776781 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| |||||| |||||| ||| || | ||||| |||||| | ||||| Sbjct 776780 GGATACCCTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGA 776721 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || || || || | ||||| || ||||||||||| Sbjct 776720 CCTCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 >seq558 Length=79715 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | ||||||||| || ||||||||||| || || ||||| |||||| Sbjct 66390 ACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCC 66331 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||||| || | || | |||||| ||||| || || || || ||||| ||| Sbjct 66330 AATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGG 66271 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| |||||| ||||||| || |||| || ||||| | || | ||||| Sbjct 66270 ATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTTA 66211 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGC 118741 || || || |||||||| ||||| ||||| || Sbjct 66210 CCCGTAAGGGTTTTTACGAAAATTTGCATTGC 66179 >seq10 Length=3877145 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | || || || | ||| || || || ||||| || || ||| Sbjct 2844818 TACCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGG 2844759 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| |||||| | |||||| |||||| | || | ||| || ||||| || | Sbjct 2844758 ACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTG 2844699 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| |||||| ||| || | || | || || | ||| | Sbjct 2844698 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAA 2844639 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | ||||| || |||| |||||| || ||||||||||| Sbjct 2844638 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| ||||| || | || || || ||||| |||||||||||| || ||| || || Sbjct 2845486 CAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTC 2845427 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | ||||| || || |||| | ||| || ||||| || || || |||||||| || Sbjct 2845426 CTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATC 2845367 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | || || ||||| | ||||| |||||| | || | |||||||| | || | | Sbjct 2845366 TTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGT-TCGACCTCCAAAGTAATAG 2845308 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || || || || || || ||||| Sbjct 2845307 TTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| ||||| || | || || || ||||| || ||||| || Sbjct 2845274 TACCACCACGGAGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCG 2845215 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||||| | ||||| || || |||| | ||| || ||||| || | Sbjct 2845214 ACAGGGTGCGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTG 2845155 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||| ||| ||||| ||||| | || | || || | ||| | Sbjct 2845154 GAATGCCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAA 2845095 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 2845094 CTTCCAAGGTTATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433800939119824