Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_002185.1 Length=35466 Score E Sequences producing significant alignments: (Bits) Value seq884 123 6e-24 seq641 123 6e-24 >seq884 Length=19560 Score = 123 bits (136), Expect = 6e-24 Identities = 228/333 (68%), Gaps = 1/333 (0%) Strand=Plus/Plus Query 5357 AATTTTTAAGAGGAGAAAAAACATGATTAACAATACAGTTTTAGTTGGAAGATTAACTAA 5416 |||| ||| ||| || | || ||||| ||| | || ||||||||| | ||||| || Sbjct 778 AATTATTAGGAG-AGTGACAATATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAA 836 Query 5417 AGACCCAGAGTTTAAATACACAGGTAGCAACATCGCAGTAGCATCTTTCAGCCTTGCGGT 5476 ||| ||| || ||||| | || ||||| | | || | ||||| || Sbjct 837 AGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGT 896 Query 5477 TAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAAGCAGACTTTATCAATTGCGTTAT 5536 ||||||||||||| | || || || || ||||| || |||||||| || || || Sbjct 897 GAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAAT 956 Query 5537 CTGGCGCCAGCAAGCTGAAAATTTGGCTAATTGGGCTAAAAAAGGCGCATTAATTGGAAT 5596 ||||| ||| ||||||| ||||||||| || ||||| ||||| | ||| | Sbjct 957 TTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGT 1016 Query 5597 CACTGGACGTATTCAGACTCGTAGCTATGAAAACCAACAGGGTCAACGAGTGTATGTGAC 5656 ||| | ||||| ||||||| ||||| |||||||| || ||||| || |||||||| Sbjct 1017 TGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGAC 1076 Query 5657 AGAGGTAGTCGCTGAGAATTTCCAAATGCTAGA 5689 || || || |||| ||||||| | |||| Sbjct 1077 TGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 123 bits (136), Expect = 6e-24 Identities = 228/333 (68%), Gaps = 1/333 (0%) Strand=Plus/Minus Query 5357 AATTTTTAAGAGGAGAAAAAACATGATTAACAATACAGTTTTAGTTGGAAGATTAACTAA 5416 |||| ||| ||| || | || ||||| ||| | || ||||||||| | ||||| || Sbjct 27097 AATTATTAGGAG-AGTGACAATATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAA 27039 Query 5417 AGACCCAGAGTTTAAATACACAGGTAGCAACATCGCAGTAGCATCTTTCAGCCTTGCGGT 5476 ||| ||| || ||||| | || ||||| | | || | ||||| || Sbjct 27038 AGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGT 26979 Query 5477 TAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAAGCAGACTTTATCAATTGCGTTAT 5536 ||||||||||||| | || || || || ||||| || |||||||| || || || Sbjct 26978 GAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAAT 26919 Query 5537 CTGGCGCCAGCAAGCTGAAAATTTGGCTAATTGGGCTAAAAAAGGCGCATTAATTGGAAT 5596 ||||| ||| ||||||| ||||||||| || ||||| ||||| | ||| | Sbjct 26918 TTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGT 26859 Query 5597 CACTGGACGTATTCAGACTCGTAGCTATGAAAACCAACAGGGTCAACGAGTGTATGTGAC 5656 ||| | ||||| ||||||| ||||| |||||||| || ||||| || |||||||| Sbjct 26858 TGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGAC 26799 Query 5657 AGAGGTAGTCGCTGAGAATTTCCAAATGCTAGA 5689 || || || |||| ||||||| | |||| Sbjct 26798 TGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 26766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113362098616992