Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq28 104 3e-17 seq50 100 3e-16 seq20 96.9 4e-15 seq152 95.1 1e-14 seq160 93.3 5e-14 seq25 93.3 5e-14 >seq28 Length=2501623 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2077881 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2077940 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 2077941 TACTACCGAGGA 2077952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 1758635 TTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 1758694 Query 60123 CTATACTACCGAGGAT 60138 |||||||| ||||||| Sbjct 1758695 CTATACTATCGAGGAT 1758710 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1751746 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1751805 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 1751806 TACTATCGAGGACTG 1751820 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2232636 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 2232695 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2232696 ATACTATCGAGGA 2232708 >seq50 Length=1876805 Score = 100 bits (110), Expect = 3e-16 Identities = 75/87 (86%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 734780 TTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 734721 Query 60123 CTATACTACCGAGGATTGAATATATAA 60149 |||||||| ||||||||| |||| ||| Sbjct 734720 CTATACTATCGAGGATTG-ATATTTAA 734695 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/90 (86%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 735707 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 735766 Query 60124 TATACTACCGAGGA--TTGAATATATAACT 60151 ||||||| |||||| |||||| ||| ||| Sbjct 735767 TATACTATCGAGGATGTTGAAT-TATCACT 735795 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| || Sbjct 733889 ATTTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 733948 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 733949 CACTATACTATCGAGGA 733965 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 735513 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 735454 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 735453 ATACTATCGAGGATT 735439 >seq20 Length=2842481 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 1347864 TTTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1347923 Query 60122 ACTATACTACCGAGGATT 60139 ||||||||| |||||||| Sbjct 1347924 ACTATACTATCGAGGATT 1347941 >seq152 Length=591602 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| ||||| || | |||||| |||||| ||||||||||||||||||||| || Sbjct 201702 AAAAATTAAATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 201761 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||| ||||||| Sbjct 201762 ACTGACCACTATACTATCGAGGAT 201785 >seq160 Length=517371 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 232946 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 232887 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 232886 TACTATCGAGGACTGA 232871 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 233131 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 233190 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 233191 TACTATCGAGGACTGA 233206 >seq25 Length=2595154 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 539015 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 538956 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 538955 ATACTATCGAGGAT 538942 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 634809 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 634868 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 634869 ATACTATCGAGGAT 634882 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 635199 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 635258 Query 60125 ATACTACCGAGGA--TTGAA 60142 |||||| |||||| ||||| Sbjct 635259 ATACTATCGAGGACGTTGAA 635278 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 637221 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 637280 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 637281 ATACTATCGAGGAT 637294 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 540398 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 540339 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 540338 TACTATCGAGGACTG 540324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571777772904160