Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7 205 9e-48 >seq7 Length=4380649 Score = 205 bits (226), Expect = 9e-48 Identities = 488/729 (67%), Gaps = 14/729 (2%) Strand=Plus/Plus Query 16048 TCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| || | || || | ||| ||||||||||||||||| | |||| | | || Sbjct 4094549 TCCCAGCTCGACTAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCA 4094608 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 ||||| || ||||| || || || | || || ||||| || | || || || ||||| Sbjct 4094609 ATTCATACCAATTAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAAC 4094668 Query 16168 CGCTTC---AATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTT 16224 ||||| ||||||| | || | || || || || | || || |||| Sbjct 4094669 AGCTTCGGAAATGATTTCAATAATTCGTTCATTACTT---GGCTTCTGTATCAAATGTTG 4094725 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 |||||| | ||| || ||||||||||||| || ||||| | |||| ||| || || Sbjct 4094726 AAACATCAAACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGA 4094785 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||| || | || ||||||| || |||||||||| ||| || || | ||||| || Sbjct 4094786 AAACGTTAAGCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCC 4094845 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT--CTA 16402 | || || |||||||| || || |||||||||| | || ||||| | || | | Sbjct 4094846 ACTGAAAAAAATACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGA 4094905 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTT 16461 ||| | ||||| ||||||| ||| || | || || ||| ||| | Sbjct 4094906 CTTTGAGGAA--ATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGG-CATCGT 4094962 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 || || ||||| |||||||| || ||| ||| ||| |||||| ||||| |||| Sbjct 4094963 TTCAATAGCATTGAATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAA 4095022 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581 || |||||||||||| ||||| | |||||||| || || ||||| ||||| || || | Sbjct 4095023 TATACTATACATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACG 4095082 Query 16582 AGCTTCGGATATTTGTA-CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 || || | | ||| | || | || | || | ||| |||| || || ||||| || | Sbjct 4095083 TGCCTCTGTAACTTGGACCTCCTGACT-GAATCGTTCAACTAAATTCTCATTAACAATAC 4095141 Query 16641 CATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAA 16700 |||| || |||||||| || | || |||| || |||| ||| || || | | Sbjct 4095142 CATCAGATGCGGCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGA 4095201 Query 16701 GTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAG 16760 | | ||| ||| | |||||| || | ||| || || || || |||||||| || | Sbjct 4095202 GACGTGCCCAATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACG 4095261 Query 16761 CAACAGCCT 16769 | | |||| Sbjct 4095262 CTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462479786039200