Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_002666.1 Length=35538 Score E Sequences producing significant alignments: (Bits) Value seq884 96.9 8e-16 seq641 96.9 8e-16 >seq884 Length=19560 Score = 96.9 bits (106), Expect = 8e-16 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 6714 GCTGTAAATCGCCAGTTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGC 6773 ||||| || || | |||| ||| || |||||||| || || ||||| || ||||| Sbjct 892 GCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGT 951 Query 6774 GTTATTTGGCGACAACAAGCCGAAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATT 6833 || |||||||| | | || |||| | ||||| | | || |||||| | || | Sbjct 952 GTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTA 1011 Query 6834 GGAATAACTGGACGGATTCAAACAAGGAACTATGAGAACCAACAAGGACAAAAAGTTTAT 6893 ||| | ||| | |||||||| | || ||||| ||||||||||| ||| || ||| Sbjct 1012 GGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTAT 1071 Query 6894 GTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGA 6931 || || ||||||||| || | ||||||| | |||| Sbjct 1072 GTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 96.9 bits (106), Expect = 8e-16 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 6714 GCTGTAAATCGCCAGTTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGC 6773 ||||| || || | |||| ||| || |||||||| || || ||||| || ||||| Sbjct 26983 GCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGT 26924 Query 6774 GTTATTTGGCGACAACAAGCCGAAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATT 6833 || |||||||| | | || |||| | ||||| | | || |||||| | || | Sbjct 26923 GTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTA 26864 Query 6834 GGAATAACTGGACGGATTCAAACAAGGAACTATGAGAACCAACAAGGACAAAAAGTTTAT 6893 ||| | ||| | |||||||| | || ||||| ||||||||||| ||| || ||| Sbjct 26863 GGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTAT 26804 Query 6894 GTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGA 6931 || || ||||||||| || | ||||||| | |||| Sbjct 26803 GTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 26766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113592483372000