Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq45 183 2e-41 >seq45 Length=1794600 Score = 183 bits (202), Expect = 2e-41 Identities = 417/621 (67%), Gaps = 10/621 (2%) Strand=Plus/Plus Query 20036 GAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGT 20095 ||||| ||||| ||||||||||| || || ||||| ||| || || | |||||| | Sbjct 1449284 GAAATAGTTTTCCATTATTAACTACAAAGCGAGTATTCTGGCGAGCGGTCGCTGAAGAAT 1449343 Query 20096 TATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGA 20155 | | |||||| || | || |||| | ||| ||| ||||||| | | | Sbjct 1449344 TGCTGTGGTTTGTTCATGGTCAAACAGACGCTAAAATACTTCAAGAAAAAAATATCCACA 1449403 Query 20156 TTTGGAGCGCACATGGATCTAAGCAA---TTTTTACACAGCAATGGATTTGACAACCGTC 20212 | ||| | | || | ||| | | ||||| ||| ||| ||| ||| || Sbjct 1449404 TATGGGATGGAAATAG---TAAACGAGAGTTTTTGGACAAATGTGGGTTTTCCAATCGCG 1449460 Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || ||| | ||||| || || || ||||||||| | |||||||| || | || Sbjct 1449461 AAGAAGGTGATCTAGGTCCAGTTTACGGTTTTCAATGGCGTCATTTTGGGGCCAAGTACA 1449520 Query 20273 TTGACATGAACACAAA-TTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAAT 20331 || || | | | | ||| || | ||||| |||||| | || | || ||||| Sbjct 1449521 G-GAATTGCAAAGACAGTTACAAAGGTGAGGGAGTGGATCAACTTCAGGAAGTGATTAAC 1449579 Query 20332 TTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGAT 20391 ||| | || || ||||| || || | ||||| | | || ||||| || ||| Sbjct 1449580 ACAATCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCGTGGAATCCTGTCGAT 1449639 Query 20392 GTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAA 20450 | ||| ||||||| |||| || |||||| || ||| ||||||| ||||| ||| Sbjct 1449640 ATACCTCAAATGGCTCTGCCCCCTTGTCATTGTCT-TGCACAATTTTTTGTTGCCAATGG 1449698 Query 20451 TGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAA 20510 || ||||| |||||| | || ||||| ||||| |||||| | ||||| || ||||| Sbjct 1449699 AGAGTTGTCTTGTCAATTATACCAACGTAGTGCTGACATGGGATTAGGTGTACCATTCAA 1449758 Query 20511 TATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGG 20570 ||||||| || ||| ||||||| ||||||||||| || |||| ||| | | | || Sbjct 1449759 TATTGCATCATACGCGTTGCTTACCTATATGATTGCTCACATTACTGATCTCCGACCAGG 1449818 Query 20571 TGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAA 20630 ||||| |||||||| |||| || || || |||| |||||||| || | ||| Sbjct 1449819 GGACTTCGTCCACACTTTAGGCGATGCACACGTTTATAACAATCATATCGAGGCGCTAAC 1449878 Query 20631 ATTACAGTTAACACGACAACC 20651 | |||| |||| || |||| Sbjct 1449879 AGAACAGCTAACGCGTAAACC 1449899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399156891913540