Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_002703.1 Length=38347 Score E Sequences producing significant alignments: (Bits) Value seq1321 98.7 2e-16 seq884 96.9 8e-16 seq641 96.9 8e-16 seq273 95.1 3e-15 >seq1321 Length=4872 Score = 98.7 bits (108), Expect = 2e-16 Identities = 231/341 (68%), Gaps = 22/341 (6%) Strand=Plus/Plus Query 37098 ATTATGGATTGCGGCATATCCCAATTATGAAGTAACACCAGTTCCAAACTATAGCT-TCT 37156 ||||||||| || | |||||| |||||||||| ||||| |||||| || | | | | Sbjct 2394 ATTATGGATGGCAGAATATCCAGATTATGAAGTGACACCTTATCCAAATTACAATTATTT 2453 Query 37157 TCCCAAGTATGGACGGAATATCATTATTT--CAGTTCACATCCACTTATATCGCTGGTGG 37214 ||| | || | |||||| ||||| |||||||| || || || | || || || Sbjct 2454 TCCTTCATTTGAA---AATATCGGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGAGG 2510 Query 37215 ACTGGATGGTAATGTTGATTTAACAGGAATCACAGATAATGGATACAGAAAACAGAAAGG 37274 || |||||||| |||||||||||||| || || |||||||| || | || |||| Sbjct 2511 GCTAGATGGTAACGTTGATTTAACAGGTATTACTGATAATGGTTATACAA---AGAATAA 2567 Query 37275 CCAAGAAGTTAAACCCAATACTGCTACACCGGCCATTGAAAATGGTAAAGAAGCC--AAT 37332 |||| || ||| | || ||||| || ||||| || || ||| | || Sbjct 2568 CCAACCAG--CAAC---AAAC----ACACCAGCAATTGATGCAGGGGAAAAAGTCGAAAA 2618 Query 37333 GAAGTTAAAGGAAACGATGTAGAAGCTGGAATGACGGTTAAAGTAAACTTTGGCGCTAAG 37392 | | || | |||||| ||| || || |||||||| || ||| ||| | | Sbjct 2619 TACGCCAA--GTTCCGATGTTAAAGTCGGCGATACTGTTAAAGTGAAATTTAGCGTTGAT 2676 Query 37393 AATTATGCCACAGGAGAAACAATTCCTCAATGGGTAAAAGG 37433 || || ||||| ||| | ||||| |||||||||||||| Sbjct 2677 GCTTGGGCTACAGGTGAAGCTATTCCGCAATGGGTAAAAGG 2717 >seq884 Length=19560 Score = 96.9 bits (106), Expect = 8e-16 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 6612 GCTGTAAATCGCCAGTTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTAATTAACTGC 6671 ||||| || || | |||| ||| || |||||||| || || ||||| || ||||| Sbjct 892 GCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGT 951 Query 6672 GTTATTTGGCGACAACAAGCCGAAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATT 6731 || |||||||| | | || |||| | ||||| | | || |||||| | || | Sbjct 952 GTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTA 1011 Query 6732 GGAATAACTGGACGGATTCAAACAAGGAACTATGAGAACCAACAAGGACAAAAAGTTTAT 6791 ||| | ||| | |||||||| | || ||||| ||||||||||| ||| || ||| Sbjct 1012 GGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTAT 1071 Query 6792 GTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGA 6829 || || ||||||||| || | ||||||| | |||| Sbjct 1072 GTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 96.9 bits (106), Expect = 8e-16 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 6612 GCTGTAAATCGCCAGTTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTAATTAACTGC 6671 ||||| || || | |||| ||| || |||||||| || || ||||| || ||||| Sbjct 26983 GCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGT 26924 Query 6672 GTTATTTGGCGACAACAAGCCGAAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATT 6731 || |||||||| | | || |||| | ||||| | | || |||||| | || | Sbjct 26923 GTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTA 26864 Query 6732 GGAATAACTGGACGGATTCAAACAAGGAACTATGAGAACCAACAAGGACAAAAAGTTTAT 6791 ||| | ||| | |||||||| | || ||||| ||||||||||| ||| || ||| Sbjct 26863 GGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTAT 26804 Query 6792 GTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGA 6829 || || ||||||||| || | ||||||| | |||| Sbjct 26803 GTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 26766 >seq273 Length=32108 Score = 95.1 bits (104), Expect = 3e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 27738 AGTTCATTAGCGGGATTGGAGATTGGATTCGGGAGCATAAAGGTCCAATCCGTGTCGACA 27797 |||| | || || ||||| |||||||| || || ||||||||||| || || ||| | Sbjct 4659 AGTTTGTCAGTGGTATTGGTGATTGGATACGAGAACATAAAGGTCCTATTAGTTACGATA 4600 Query 27798 GAAAACTTTTAACTCCCGCTGGTAATGCCATTATGAATGGTTTGAAT 27844 |||||||||||| ||| |||||||| || |||||| |||||| ||| Sbjct 4599 GAAAACTTTTAATTCCAGCTGGTAAAGCGATTATGGGTGGTTTAAAT 4553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122580688605576