Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_002747.1 Length=37667 Score E Sequences producing significant alignments: (Bits) Value seq1321 102 2e-17 seq884 96.9 8e-16 seq641 96.9 8e-16 seq273 95.1 3e-15 >seq1321 Length=4872 Score = 102 bits (112), Expect = 2e-17 Identities = 234/343 (68%), Gaps = 26/343 (8%) Strand=Plus/Plus Query 33968 ATTATGGATTGCGGCATATCCAAATTACGAAGTAACACCAGTTCCAAACTATAGCT-TCT 34026 ||||||||| || | ||||||| |||| ||||| ||||| |||||| || | | | | Sbjct 2394 ATTATGGATGGCAGAATATCCAGATTATGAAGTGACACCTTATCCAAATTACAATTATTT 2453 Query 34027 TCCCAAGTATGGACGGAATTTCAGTATTC--CAGTTCACATCAACTTATGTAGCTGGCGG 34084 ||| | || | ||| || ||||| |||||||| ||||| || || || || || Sbjct 2454 TCCTTCATTTGAA---AATATCGGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGAGG 2510 Query 34085 ACTTGATGGAAATGTTGATTTAACAGGAATCACAGATAATGG--ATACGGAAAACAACAA 34142 || ||||| || |||||||||||||| || || |||||||| |||| ||| || || Sbjct 2511 GCTAGATGGTAACGTTGATTTAACAGGTATTACTGATAATGGTTATAC---AAAGAATAA 2567 Query 34143 GCCCAAGAAGTTAAACCCGATACTGCTACACCGGCCATTGAAAATGGTAAAGAAGCC--A 34200 |||| || ||| | || ||||| || ||||| || || ||| | | Sbjct 2568 --CCAACCAG--CAAC---AAAC----ACACCAGCAATTGATGCAGGGGAAAAAGTCGAA 2616 Query 34201 ATGAAGTTAAAGGAAACGATGTAGAAGTTGGAATGACGGTTAAAGTAAACTTTGGCGCTA 34260 | | | || | |||||| |||| || || |||||||| || ||| ||| | Sbjct 2617 AATACGCCAA--GTTCCGATGTTAAAGTCGGCGATACTGTTAAAGTGAAATTTAGCGTTG 2674 Query 34261 AGAATTATGCCACAGGAGAAACAATTCCTCAATGGGTAAAAGG 34303 | || || ||||| ||| | ||||| |||||||||||||| Sbjct 2675 ATGCTTGGGCTACAGGTGAAGCTATTCCGCAATGGGTAAAAGG 2717 >seq884 Length=19560 Score = 96.9 bits (106), Expect = 8e-16 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 6261 GCTGTAAATCGTCAGTTTAAGAACGCCAATGGAGAGCGAGAAGCTGACTTCATTAATTGT 6320 ||||| || ||| | |||| ||| || || || |||||||| || || || || ||| Sbjct 892 GCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGT 951 Query 6321 GTTATTTGGCGACAACAAGCCGAAAATTTAGCCAAATTTGCTAAAAAAGGCGCTTTGATT 6380 || |||||||| | | || |||| | || || | | || ||||| | || | Sbjct 952 GTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTA 1011 Query 6381 GGAATAACTGGACGAATTCAAACACGAAACTATGAGAACCAACAAGGACAAAAAGTTTAT 6440 ||| | ||| |||||||||| || || ||||| ||||||||||| ||| || ||| Sbjct 1012 GGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTAT 1071 Query 6441 GTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGA 6478 || || ||||||||| || | ||||||| | |||| Sbjct 1072 GTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 96.9 bits (106), Expect = 8e-16 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 6261 GCTGTAAATCGTCAGTTTAAGAACGCCAATGGAGAGCGAGAAGCTGACTTCATTAATTGT 6320 ||||| || ||| | |||| ||| || || || |||||||| || || || || ||| Sbjct 26983 GCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGT 26924 Query 6321 GTTATTTGGCGACAACAAGCCGAAAATTTAGCCAAATTTGCTAAAAAAGGCGCTTTGATT 6380 || |||||||| | | || |||| | || || | | || ||||| | || | Sbjct 26923 GTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTA 26864 Query 6381 GGAATAACTGGACGAATTCAAACACGAAACTATGAGAACCAACAAGGACAAAAAGTTTAT 6440 ||| | ||| |||||||||| || || ||||| ||||||||||| ||| || ||| Sbjct 26863 GGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTAT 26804 Query 6441 GTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGA 6478 || || ||||||||| || | ||||||| | |||| Sbjct 26803 GTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 26766 >seq273 Length=32108 Score = 95.1 bits (104), Expect = 3e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 25563 AGTTCATTAGCGGGATTGGCGATTGGATTCGGAAGCATAAAGGGCCAATCCGTAAGGATA 25622 |||| | || || ||||| |||||||| || | |||||||| || || || | |||| Sbjct 4659 AGTTTGTCAGTGGTATTGGTGATTGGATACGAGAACATAAAGGTCCTATTAGTTACGATA 4600 Query 25623 GAAAACTTTTAATTCCTGCTGGTAAAGCCATTATGACAGGTTTGAAT 25669 |||||||||||||||| ||||||||||| |||||| ||||| ||| Sbjct 4599 GAAAACTTTTAATTCCAGCTGGTAAAGCGATTATGGGTGGTTTAAAT 4553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120404832586056