Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq48 96.9 3e-15 >seq10 Length=3877145 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||||||||| || || |||||| || |||||||||||| || | ||| |||| Sbjct 2845029 AATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGTCCGTCC 2844970 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || ||||| || || || ||||| || || || | |||||| ||||| Sbjct 2844969 TCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTTTGTCT 2844910 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||||| ||||| | | | || | || ||||||| ||||| || Sbjct 2844909 TGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTAATTGTT 2844850 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||| || || || ||||||||||| Sbjct 2844849 TTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 |||||||| || || || ||||| || || |||||||| ||| ||| |||| Sbjct 2845257 AATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGTCCGTCC 2845198 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| |||||| ||||| || ||||| || ||||| || || || | |||||||| || Sbjct 2845197 TCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTATCT 2845138 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| |||||| | | | | || | ||| || |||| ||| || || Sbjct 2845137 TGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTATGGTT 2845078 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| |||||||||||||||||||| Sbjct 2845077 TTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 >seq48 Length=1730007 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || || |||||| || |||||||||||| || |||| | || Sbjct 776883 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 776824 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||||||||||||||| ||||| |||||||| || || || | |||||| ||||| Sbjct 776823 TCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGTCT 776764 Query 45245 GCAATTTT 45252 |||||| Sbjct 776763 TGAATTTT 776756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395048370937012