Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7 241 1e-58 >seq7 Length=4380649 Score = 241 bits (266), Expect = 1e-58 Identities = 475/689 (69%), Gaps = 24/689 (3%) Strand=Plus/Plus Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107 || || ||||| | |||||| | | ||||||||||| |||| ||||| || | Sbjct 4094580 AATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAAATTTACGGGCAAAGCG 4094639 Query 14108 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATT--- 14164 | ||||| ||||||| || || ||||| ||| || || || ||||||| Sbjct 4094640 TCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATGATT-TC--AATAATTCGT 4094696 Query 14165 TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGG 14224 |||||| || | | | | ||||| ||| || ||||| || ||||||||||| || Sbjct 4094697 TCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAAATCACAATGCAGA 4094756 Query 14225 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 14284 ||||| |||| || || || || ||||| ||||| || ||||| || || |||||| Sbjct 4094757 CCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCATTAAACCACGTTTT 4094816 Query 14285 tttAACCAAAATATTGCAGCGAATGATCCG--GAAAAGAATATTCCCTCAACTGCAGCAA 14342 || | ||| || || | || || ||| ||||| |||| || || || || |||| Sbjct 4094817 TTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATA--CCTTCCACAGCTGCAA 4094874 Query 14343 ACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATT 14402 | || |||| ||||| ||||| ||| || || ||||| ||||| | Sbjct 4094875 ATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAAGCAAGTGCCCAAT 4094934 Query 14403 CAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT-GTTCCTTCTCT 14461 | | || || | | ||| |||||||||||||| ||||||| ||||||| | | Sbjct 4094935 CTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAATAGTTCCTT-TGT 4094993 Query 14462 TT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTT 14519 || | | ||| ||| |||||||| || | || ||||||||||| || || | ||| | Sbjct 4094994 TTCGAATCCTT--AATATATGTATCGATTAATATACTATACATTTCGGAATGCACGTTCT 4095051 Query 14520 CCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CTGAGTAA 14578 ||||||| || ||||| ||||| ||||| | || |||| ||| |||| |||| | Sbjct 4095052 CCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACCTCCTGACT-G 4095110 Query 14579 AATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATG 14638 |||| ||| | ||||| |||||||| ||||||||| || |||||||| || |||| | Sbjct 4095111 AATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAGGCTAATACG 4095170 Query 14639 TTTTTAATAAAGTATTGCTCTTCATTG---CTGAGTTTTTTCCAATCGGCTAAATCCTTA 14695 | | || | | ||| ||||||| |||| | |||||| | | ||| ||| Sbjct 4095171 TGTGAGAT---GAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATATCTTTA 4095227 Query 14696 GAAAGATCTACTTCATCAACTGTCCAAAA 14724 |||||||| ||||| |||||||||||||| Sbjct 4095228 GAAAGATCCACTTCCTCAACTGTCCAAAA 4095256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482312004628960