Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003050.2 Length=40248 Score E Sequences producing significant alignments: (Bits) Value seq884 118 3e-22 seq641 118 3e-22 >seq884 Length=19560 Score = 118 bits (130), Expect = 3e-22 Identities = 211/303 (70%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 6897 AGGAG-GTG-CAAAATGATAAATAACGTTGTTTTAGTAGGGCGACTTACAAGAGATGCCG 6954 ||||| ||| ||| |||||||| | ||||| ||||| || || | || | |||| | Sbjct 785 AGGAGAGTGACAATATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAG 844 Query 6955 AACTGAGATACAC-GCAATCTAATATTGCGGTTGCTACGTTTACTCTTGCTGTAAACCGT 7013 | | | ||||| |||| | | ||| |||| | |||||||||||||| |||||| Sbjct 845 ATTTACGCTACACCGCAAG-TGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGT 903 Query 7014 CCATTTAAGAACGAGGCTGGAGAGCGTGAGGCTGATTTTATCAATTGCGTTATCTGGAGA 7073 |||| ||| | || || || || || ||||||||||| || || || ||| | Sbjct 904 AACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGT 963 Query 7074 CAGTTAGCTGAAAATCTTGCTAATTGGGCTAAAAAAGGCTCTCTTATCGGAGTTACAGGA 7133 || ||||||| | ||||||| || ||||| | | | |||||| || Sbjct 964 AAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGC 1023 Query 7134 GTAATTCAAACACGTAGCTATGATAACCAGCAAGGTCAACGTGTTTATGTCACAGAAGTT 7193 ||||||||| |||| ||||| ||||| ||||| |||||||| ||||| || |||||| Sbjct 1024 AGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTT 1083 Query 7194 GTT 7196 ||| Sbjct 1084 GTT 1086 >seq641 Length=27874 Score = 118 bits (130), Expect = 3e-22 Identities = 211/303 (70%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 6897 AGGAG-GTG-CAAAATGATAAATAACGTTGTTTTAGTAGGGCGACTTACAAGAGATGCCG 6954 ||||| ||| ||| |||||||| | ||||| ||||| || || | || | |||| | Sbjct 27090 AGGAGAGTGACAATATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAG 27031 Query 6955 AACTGAGATACAC-GCAATCTAATATTGCGGTTGCTACGTTTACTCTTGCTGTAAACCGT 7013 | | | ||||| |||| | | ||| |||| | |||||||||||||| |||||| Sbjct 27030 ATTTACGCTACACCGCAAG-TGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGT 26972 Query 7014 CCATTTAAGAACGAGGCTGGAGAGCGTGAGGCTGATTTTATCAATTGCGTTATCTGGAGA 7073 |||| ||| | || || || || || ||||||||||| || || || ||| | Sbjct 26971 AACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGT 26912 Query 7074 CAGTTAGCTGAAAATCTTGCTAATTGGGCTAAAAAAGGCTCTCTTATCGGAGTTACAGGA 7133 || ||||||| | ||||||| || ||||| | | | |||||| || Sbjct 26911 AAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGC 26852 Query 7134 GTAATTCAAACACGTAGCTATGATAACCAGCAAGGTCAACGTGTTTATGTCACAGAAGTT 7193 ||||||||| |||| ||||| ||||| ||||| |||||||| ||||| || |||||| Sbjct 26851 AGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTT 26792 Query 7194 GTT 7196 ||| Sbjct 26791 GTT 26789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128663486095440