Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq48 98.7 8e-16 seq558 96.9 3e-15 seq10 95.1 9e-15 seq27 82.4 6e-11 >seq48 Length=1730007 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || ||||| || ||||| ||||||||||||| || || || ||||||| Sbjct 776880 ACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 776821 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || || |||| | | |||||||| || | || || || || | Sbjct 776820 AATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGTCTTGA 776761 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || ||||| | | | | |||||| |||||| || | ||||||| | || Sbjct 776760 ATTT-TAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATGGTCTT 776702 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||||||| || ||||| |||||| Sbjct 776701 ACCAGTTAATGTTTTGACGAAAATCTGCATT 776671 >seq558 Length=79715 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| | ||| || || || |||||||||||||| |||| ||| || ||| Sbjct 66394 AAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATC 66335 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||||||||| || ||| | || | | |||||||| || | ||||||||||| Sbjct 66334 CTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATC 66275 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 |||| | || || || ||| | | ||| || || || |||| |||||| Sbjct 66274 TTGGATTT-TGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGG 66216 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| || || | |||||||| |||||||||||| Sbjct 66215 TTTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 66181 >seq10 Length=3877145 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||||| |||||||| ||||| || |||||||| | || || | || || Sbjct 2845255 TACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGTCCGTCCTC 2845196 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||||||||| || ||| |||| | | ||||||||| || | ||| |||||||| Sbjct 2845195 CAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTG 2845136 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| ||| || | ||| ||| || ||||| ||| | ||| ||| |||| Sbjct 2845135 GATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTATGGTTTT 2845076 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||| || || ||||| |||||||| Sbjct 2845075 ACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | ||| |||| |||||||| || || || || |||||||| |||| | Sbjct 2844588 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 2844529 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||| |||||| || ||| |||| | | ||||||||| ||| Sbjct 2844528 AAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 2844469 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | | |||| | | | | ||| ||| || || || Sbjct 2844468 ATTCCTTCTTTGTCCTGAATCT-TAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 2844410 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||| | ||||| ||||| || || || || ||||||||||| Sbjct 2844409 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 2844359 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| |||||||||||| || ||||| ||||||||||||| || ||| | || || Sbjct 2845027 TACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGTCCGTCCTC 2844968 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||| ||||| || | || | | ||||||||| ||| | || || || || Sbjct 2844967 CAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTG 2844908 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| |||| || || | | | | || ||| || || || | || || ||| Sbjct 2844907 AATTT-TTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTAATTGTTT 2844849 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||||||||| || || |||||||| Sbjct 2844848 TTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 18128 TGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCC 18187 ||| ||||| || ||||| || ||||||| || ||| | ||| ||||| |||||||| Sbjct 2844787 TGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCC 2844728 Query 18188 CGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-T 18246 || | || | | ||||||||| || | ||||||||||| ||||| | || | Sbjct 2844727 AGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATTT-TAGCTT 2844669 Query 18247 TGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATG 18306 |||| | ||| ||| || ||||| || | |||||| |||| || ||||| | Sbjct 2844668 TGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAG 2844609 Query 18307 TTTTTACAAAAATTTGCAT 18325 |||| || ||||| ||||| Sbjct 2844608 TTTTGACGAAAATCTGCAT 2844590 >seq27 Length=2235907 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 20162 GCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCAATAA 20221 || || ||||||||||| |||||||| |||||||| |||||||| | ||| | Sbjct 797282 GCATGCTGTTCCCATGGCTCGTCATCATCATCCCAATCCTTAAGGCCACAGCCGCAGCTA 797341 Query 20222 AAACACAAAGTTTTATCACCGCGCGAC-GTATAATAAAATCCCGCTTCGGCCAATTCATC 20280 || ||| ||||||| | | | ||||| | || || || ||||| ||||| | Sbjct 797342 AAGCACTTGACGCGATCACCG-GTGCCGGTATAGAAGAAGCCGGCATCGGCTAATTCCTT 797400 Query 20281 GGGCCTTTGCTTCATGCTGCGCGGCCACCCTTCAAAAGTTTTTAAACGCGCAGCTTCTGA 20340 ||| | |||||||||| |||| ||||| | |||| | ||| || || ||||| || Sbjct 797401 GGGACGTTGCTTCATGTTGCGTGGCCATTCGGCAAACGAACGTAAGCGTGCCGCTTC-GA 797459 Query 20341 T-GCATACTTCGGATGTTTAGGTCCTTTTAATT 20372 | ||||||| |||| || |||| | ||||| Sbjct 797460 TGGCATACTCGGGATATTCGGGTCGGTATAATT 797492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379318239223140