Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq71 551 5e-152 seq7 221 1e-52 seq10 102 7e-17 seq558 91.5 1e-13 >seq71 Length=1348405 Score = 551 bits (610), Expect = 5e-152 Identities = 1299/1948 (67%), Gaps = 41/1948 (2%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| ||||| || ||||| || ||||| || || || ||||| | |||||||||||| Sbjct 494640 TTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCC 494699 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || || || ||||| | ||||| ||||| || || | || ||||| | ||| Sbjct 494700 GTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGC 494759 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | ||| || | ||||||||| || || |||||||| || || || ||||| || ||| Sbjct 494760 TCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCC 494819 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || || || | || || || || ||||| || ||||||||||| | | || | | Sbjct 494820 ATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGTATATGT 494879 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTAT-TGTGTATGATCAAATTTTTAAT 22404 |||||| | ||| || | || | || || || ||| ||| || |||||| || Sbjct 494880 TTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGT-TATAATGGTATTTTTCAT 494938 Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTG 22464 ||| | ||||||||| | |||| | ||| | || ||| | || || ||||| Sbjct 494939 ATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAGTGATGATTGACAACTTG 494998 Query 22465 AAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 || || || || | || || ||| ||||| || || ||| ||||||| || || || Sbjct 494999 GAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACTC 495058 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 ||| || |||| || || ||||| ||||| || |||||||| || | || | ||||| Sbjct 495059 ATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGTT 495118 Query 22585 TCTCAAGCC---GTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641 | | || |||||| ||||| ||| | | ||||| ||| ||||| | Sbjct 495119 GCGTACACCATGTTGCTTT---ATTTTCTCCTTCAATTCGGTCCAGTTCCAGAGATCAGT 495175 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 ||||| || |||||||| || ||||| | | || || | || ||||| Sbjct 495176 TGGCGT---TTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTC 495232 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 || || ||||| | |||||| | | || | ||| || || || ||||| ||||| || Sbjct 495233 ATATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATA 495292 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 || ||||| ||||| |||| | ||||| | || | | |||||||| || | Sbjct 495293 GTAAATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAA 495352 Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881 |||||| | | || ||||| || | ||| || | ||| ||||| || || || | | Sbjct 495353 ACGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCG 495412 Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 || |||||| || ||||| || || ||||| ||| || || || ||||||| Sbjct 495413 CAAATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAA 495472 Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGA--T 22999 || | || |||||||| || | | |||||| | ||| | | Sbjct 495473 ATTACGCGTAACAATTTTTGTGACTTCTTTAAGCCGTTTAAAGTC--ATACGTTTTATCT 495530 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 || ||| || |||| | || || ||||| | |||||| || || |||||||| Sbjct 495531 GGTGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCGGGT 495590 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 | | || || |||||||||||||| | ||| ||||| || |||||||| | ||| | Sbjct 495591 GCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTGC 495650 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 || || || |||| |||||| | ||| || || | ||||||||| ||||| ||||| ||| Sbjct 495651 TGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTACC 495710 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC------GCACGTAC 23233 ||||| || || || || ||| | | | || || | ||| | || |||||| Sbjct 495711 TGCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTAAC-CTTCTTATTAGCACGT-- 495767 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGC 23292 ||||||| || || || | || || || || || |||| | || | Sbjct 495768 ---CCTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGT 495824 Query 23293 CAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352 | |||| | || | |||||||| || ||| | || ||| || |||| Sbjct 495825 AAACCCGGACACTTATGT-GGACACATTAGCGACCAGTCTTCATCGGCTTCGACACGTCG 495883 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||| |||||||||||||| | || ||||| | || | ||||| ||| ||||| Sbjct 495884 CATAAATAGATCCGGTATCCACAAGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTT 495943 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||| || || || |||||||||||||| || || |||||||||||||| || || || || Sbjct 495944 GCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATA 496003 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | |||||| ||||| || | |||| ||| || ||||| || ||||| ||| || || Sbjct 496004 GATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATT 496063 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 ||||||| ||||| ||||| | ||| ||||| | ||| | ||||| | | Sbjct 496064 AAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAGT 496123 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 ||||| || || | | || || | ||||| || || || | ||||| || |||| Sbjct 496124 GCCTTTCGCGCGTATGCAATGCACATTCAAACCAATACCGCCTGCAGATTTGGAGATCAA 496183 Query 23653 CGCGCATTG--TTTCAGAGTGTCGTAGATGCCCTCGAT---GCTGTCCTCTTTGGTCGCG 23707 || || || | | || ||| | | || || || || |||| | |||| Sbjct 496184 TGCACAGTGATGTGCCGA-TGT-GAAAATACCGTCAATTGAATCGTCCACCATGGT---A 496238 Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 | || || ||||| |||| ||||| || || || || | ||| || || || | Sbjct 496239 AGCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAG 496298 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 || || ||||| || | | || | | ||||| || || || ||||||||||| || Sbjct 496299 GCATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCT 496358 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG 23887 || || |||||||||||||| |||||||| | ||||| ||| || | ||| || | | Sbjct 496359 TCACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTG 496418 Query 23888 CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTA 23947 || || | |||| || ||| ||||||| | |||||||| |||||||| | ||| | Sbjct 496419 CCATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAACCA 496478 Query 23948 AAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCAT-TGGCAGCGATGATGTT 24006 |||||||| || | | ||| || || ||||| || | ||||| | || | | || Sbjct 496479 AAGTCACGGTCATAGATTATAGCGGAGTTCAAGCGATCCGCATGTTGC-TTTACAACATT 496537 Query 24007 GTAATGAAAATTCGATATCATCGGCGTT 24034 |||||||| | |||||| || |||||| Sbjct 496538 ATAATGAAAGTCCGATATTATAGGCGTT 496565 >seq7 Length=4380649 Score = 221 bits (244), Expect = 1e-52 Identities = 385/554 (69%), Gaps = 22/554 (4%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||||||||| ||||||||||| || || ||||| || || ||||| ||| || |||| Sbjct 4095270 AGGCAGAAGCGTCGTTTTGGACAGTTGAGGAAGTGGATCTTTCTAAAGATATGGATGATT 4095211 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 ||| |||| || ||| | |||| || |||||| || || ||||| |||| Sbjct 4095210 GGGCACGTCTCACTGACAATGAACGGCATTTCATCTCACACGTATTAGCCTTTTTTGCCG 4095151 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 |||| |||||||||||||| |||||||| || ||| |||| || || || ||||| | Sbjct 4095150 CATCTGATGGTATTGTTAATGAGAATTTAGTTGAACGATTCAGTCAGGAGGTCCAAGTTA 4095091 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 | ||||| | || || || ||||||||| | || || || ||||||||||| ||||||| Sbjct 4095090 CAGAGGCACGTTGTTTCTATGGATTTCAAATTGCTATGGAGAACGTGCATTCCGAAATGT 4095031 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGA----CAACGACGAGAAACGTAGACTGTTC 57884 || || | |||||||| || | ||||| ||| | || ||| || | ||| Sbjct 4095030 ATAGTATATTAATCGATACATATATTAAGGATTCGAAACAA--AGGAAC-TA-TTTATTC 4094975 Query 57885 AACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATGG 57941 || || || ||||| ||||| || || ||| |||||||| ||| || | ||| Sbjct 4094974 AATGCTATTGAAACGATGCCTGC---CGTAAAGCGTAAGGCAGATTGGGCACTTGCTTGG 4094918 Query 57942 AT----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 || |||| |||| | || | || | |||| || || || || || || Sbjct 4094917 ATTTCCTCAAAG----TCGGCAAACTTTGGTGAACGTGTAATTGCATTTGCAGCTGTGGA 4094862 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 |||||| || || || || |||||| | || || ||| | || ||||| || | || Sbjct 4094861 AGGTATTTTTTTCAGTGGAAGTTTTGCGTCGATCTTCTGGCTTAAAAAACGTGGTTTAAT 4094802 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| ||| | |||||| ||| ||| | || || || ||||||||||| ||| |||||| Sbjct 4094801 GCCTGGCTTAACGTTTTCCAATGAGCTAATCTCACGAGACGAGGGTCTGCATTGTGATTT 4094742 Query 58118 TGCGTGCCTAATGT 58131 || || | |||| Sbjct 4094741 CGCATGTTTGATGT 4094728 >seq10 Length=3877145 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || ||| |||| || ||||| ||||| | || ||||| || ||| Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | |||||| | ||| || |||||||| | || || || || Sbjct 2844650 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAA 2844709 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || |||||||||||||||||||| || | | | || || ||| ||||| Sbjct 2844710 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGA-TGGACGCACACTGTCCGACTATAA 2844768 Query 31372 CATTCAAAAAGAATCGAC 31389 ||||| || ||||| || Sbjct 2844769 TATTCAGAAGGAATCCAC 2844786 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || |||| || ||||| || || | || |||||||| || Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || ||| | ||| ||||| || || | || || || || Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCAA 2844937 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| ||||||||||| || ||||| ||| || || ||| || ||| Sbjct 2844938 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAAC 2844997 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || ||||| || || || ||||| ||||| Sbjct 2844998 ATCCAAAAGGAGTCAACACTTCACTTGGTA 2845027 >seq558 Length=79715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || || || || ||||| ||||| | || |||||||| || Sbjct 66182 ATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTTCG 66241 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | ||||| || ||| | ||| || |||||||| | || || || || Sbjct 66242 GATACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCAA 66301 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| |||| || || || ||||| ||||| || | || || || || ||| Sbjct 66302 CAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACAAC 66361 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || | || | || ||| | || || || ||| Sbjct 66362 ATTCAGAAGGAGTCTACATTACACTTAGTCCTTCGTCTTAGAGGTGGT 66409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445735352370240