Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003157.5 Length=43106 Score E Sequences producing significant alignments: (Bits) Value seq884 136 1e-27 seq641 136 1e-27 >seq884 Length=19560 Score = 136 bits (150), Expect = 1e-27 Identities = 225/325 (69%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 9649 AGCAGAGCaaaaaaaTGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAG 9708 || |||| | || ||||| || | || || ||||||| || | || || || || Sbjct 785 AGGAGAGTGACAATATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAG 844 Query 9709 AGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGCTACGTTCACACTTGCGGTAAACCGCA 9768 | | ||||| || || ||| || || | | || || ||||| || ||||| | Sbjct 845 ATTTACGCTACACCGCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTA 904 Query 9769 GATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCTGGCGAC 9828 |||| | | |||||||| || ||||||| ||||| || |||||||| || ||||| Sbjct 905 ACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTA 964 Query 9829 AGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTC 9888 || ||||||||| | || || | || ||||| | || | |||||| || Sbjct 965 AGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCA 1024 Query 9889 GTATTCAGACACGTAACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTG 9948 | ||||| || ||||| || || ||||||||||| |||||||||||||| || ||||||| Sbjct 1025 GAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTG 1084 Query 9949 TTGCAGATAATTTCCAAATGTTGGA 9973 || || | ||||||| | || || Sbjct 1085 TTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 136 bits (150), Expect = 1e-27 Identities = 225/325 (69%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 9649 AGCAGAGCaaaaaaaTGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAG 9708 || |||| | || ||||| || | || || ||||||| || | || || || || Sbjct 27090 AGGAGAGTGACAATATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAG 27031 Query 9709 AGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGCTACGTTCACACTTGCGGTAAACCGCA 9768 | | ||||| || || ||| || || | | || || ||||| || ||||| | Sbjct 27030 ATTTACGCTACACCGCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTA 26971 Query 9769 GATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCTGGCGAC 9828 |||| | | |||||||| || ||||||| ||||| || |||||||| || ||||| Sbjct 26970 ACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTA 26911 Query 9829 AGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTC 9888 || ||||||||| | || || | || ||||| | || | |||||| || Sbjct 26910 AGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCA 26851 Query 9889 GTATTCAGACACGTAACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTG 9948 | ||||| || ||||| || || ||||||||||| |||||||||||||| || ||||||| Sbjct 26850 GAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTG 26791 Query 9949 TTGCAGATAATTTCCAAATGTTGGA 9973 || || | ||||||| | || || Sbjct 26790 TTTGCGAGAGTTTCCAATTATTAGA 26766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137808480953952