Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003216.1 Length=40834 Score E Sequences producing significant alignments: (Bits) Value seq884 122 2e-23 seq641 122 2e-23 >seq884 Length=19560 Score = 122 bits (134), Expect = 2e-23 Identities = 223/323 (69%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 37623 ATGATGAATCGTGTAGTACTTGTAGGACGATTAACTAAAGACCCTGATTTACGTTACACT 37682 ||||| || | || || | || ||||| ||||| ||||| |||||||| ||||| Sbjct 799 ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACC 858 Query 37683 CCAGCCGGCGCGGCTGTTGCGACTTTTACGCTAGCAGTAAATCGTATGTTCACTAATCAA 37742 || || | || |||| | ||||| || || || || |||| || || || ||| Sbjct 859 GCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAA 918 Query 37743 AACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGCAAACCAGCAGAAAAC 37802 ||||| ||||||||||| ||||| || || ||||| ||||||| || || || |||| Sbjct 919 AACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACA 978 Query 37803 GTTGCTAAT--TTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTC 37860 | |||||| | || | ||||||| | || |||| ||| | ||||||||| Sbjct 979 ATGGCTAATTATACTCG--TAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTC 1036 Query 37861 GTAATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAG 37920 |||||||||| | | | || ||||||| | || ||||| || ||| || || Sbjct 1037 GTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTT--TGCGAGAG 1094 Query 37921 TT--CAATTCTTAGAACCTAAAA 37941 || ||||| ||||| || |||| Sbjct 1095 TTTCCAATTATTAGAGCCAAAAA 1117 >seq641 Length=27874 Score = 122 bits (134), Expect = 2e-23 Identities = 223/323 (69%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 37623 ATGATGAATCGTGTAGTACTTGTAGGACGATTAACTAAAGACCCTGATTTACGTTACACT 37682 ||||| || | || || | || ||||| ||||| ||||| |||||||| ||||| Sbjct 27076 ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACC 27017 Query 37683 CCAGCCGGCGCGGCTGTTGCGACTTTTACGCTAGCAGTAAATCGTATGTTCACTAATCAA 37742 || || | || |||| | ||||| || || || || |||| || || || ||| Sbjct 27016 GCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAA 26957 Query 37743 AACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGCAAACCAGCAGAAAAC 37802 ||||| ||||||||||| ||||| || || ||||| ||||||| || || || |||| Sbjct 26956 AACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACA 26897 Query 37803 GTTGCTAAT--TTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTC 37860 | |||||| | || | ||||||| | || |||| ||| | ||||||||| Sbjct 26896 ATGGCTAATTATACTCG--TAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTC 26839 Query 37861 GTAATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAG 37920 |||||||||| | | | || ||||||| | || ||||| || ||| || || Sbjct 26838 GTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTT--TGCGAGAG 26781 Query 37921 TT--CAATTCTTAGAACCTAAAA 37941 || ||||| ||||| || |||| Sbjct 26780 TTTCCAATTATTAGAGCCAAAAA 26758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130538562018144