Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq45 176 9e-39 seq7 100 6e-16 >seq45 Length=1794600 Score = 176 bits (194), Expect = 9e-39 Identities = 443/664 (67%), Gaps = 12/664 (2%) Strand=Plus/Plus Query 35153 GATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGA 35212 ||||||||||| || |||| || |||||||| |||||||| | || ||| ||| Sbjct 1449226 GATAGAACTGGCGTTGGTACTCGGTCAATTTTTGGTGCCCAAATGCGATTTGATCTCCGA 1449285 Query 35213 GACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAA 35272 | | | ||||| | | ||||| ||| | | |||||| ||| || | |||||| Sbjct 1449286 AAT---AGTTTTCCATTATTAACTACAAAGCGAGTATTCTGGCGAGCGGTCGCTGAAGAA 1449342 Query 35273 CTCTCGTGGTTCAT-CAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATA-- 35329 | |||||| | || || ||| |||||||| ||| | | |||||| || ||| Sbjct 1449343 TTGCTGTGGTTTGTTCATGGTCAA-ACAGACGCTAAAATACTT--CAAGAAAAAAATATC 1449399 Query 35330 CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGA 35389 ||||| ||| | | ||| | || || |||||||||| | ||||| | | || | Sbjct 1449400 CACATATGGGATGGAAATAGTAAACGAGAGTTTTTGGACAAATGTGGGTTTTCCAATCGC 1449459 Query 35390 GCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT 35449 | ||| || ||| | || || || ||||| || ||||||||||||||||| || | || Sbjct 1449460 GAAGAAGGTGATCTAGGTCCAGTTTACGGTTTTCAATGGCGTCATTTTGGGGCCAAGTAC 1449519 Query 35450 GATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAG 35509 | || | ||| | || |||| | |||||| | | | | || Sbjct 1449520 AGGAATTGCAAAGACAGTTACAAAGGTGAGGGAGTGGATCAACTTCAGGAAGTGATTAAC 1449579 Query 35510 ACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGAT 35569 || | ||| | |||||| ||||| || | || || ||| | || ||||||||| | ||| Sbjct 1449580 ACAATCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCGTGGAATCCTGTCGAT 1449639 Query 35570 CTTCACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGG 35628 | | | |||||||| || || || || || || || ||||||| ||| || ||||| Sbjct 1449640 ATACCTCAAATGGCTCTGCCCCCTTGTCAT-TGTCTTGCACAATTTTTTGTTGCCAATGG 1449698 Query 35629 AGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAA 35688 ||| ||||| || || || || || || || | || | || || || || || ||||| Sbjct 1449699 AGAGTTGTCTTGTCAATTATACCAACGTAGTGCTGACATGGGATTAGGTGTACCATTCAA 1449758 Query 35689 TATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGG 35748 ||||||||||||| | | || || || |||| || || | ||| ||| || Sbjct 1449759 TATTGCATCATACGCGTTGCTTACCTATATGATTGCTCACATTACTGATCTCCGACCAGG 1449818 Query 35749 AGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAA- 35807 || || ||| |||| | || || |||||| ||||||| | || || |||| | ||| Sbjct 1449819 GGACTTCGTCCACACTTTAGGCGATGCACACGTTTATAACAATCATATCGAGGCGCTAAC 1449878 Query 35808 AGAA 35811 |||| Sbjct 1449879 AGAA 1449882 >seq7 Length=4380649 Score = 100 bits (110), Expect = 6e-16 Identities = 211/314 (67%), Gaps = 3/314 (1%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| ||||| || || ||||| || || || ||||| || || || || |||||| Sbjct 4094880 TTGCATTTGCAGCTGTGGAAGGTATTTTTTTCAGTGGAAGTTTTGCGTCGATCTTCTGGC 4094821 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | || || | ||| | ||||||| | || | ||||||||| | || || | |||| Sbjct 4094820 TTAAAAAACGTGGTTTAATGCCTGGCTTAACGTTTTCCAATGAGCTAATCTCACGAGACG 4094761 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCAT 102098 | ||||| ||| | || || ||||| || |||| || | ||| | | | ||| Sbjct 4094760 AGGGTCTGCATTGTGATTTCGCATGTTTGATGTTTCAACA---TTTGATACAGAAGCCAA 4094704 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 | ||| | ||| ||||||| | | ||||| || |||||| |||||||| | | Sbjct 4094703 GTAATGAACGAATTATTGAAATCATTTCCGAAGCTGTTAAAATTGAGCAAGAATTCTTAA 4094644 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218 | | | |||| || || ||| | || ||||| ||||| | ||| | | || || | Sbjct 4094643 CTGACGCTTTGCCCGTAAATTTAATTGGTATGAATTGCAAATCAATGTCCGATTATATAG 4094584 Query 102219 AATTTGTGGCAGAT 102232 |||||||||| ||| Sbjct 4094583 AATTTGTGGCTGAT 4094570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989513352361260