Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq71 453 1e-122 seq7 304 2e-77 >seq71 Length=1348405 Score = 453 bits (502), Expect = 1e-122 Identities = 1248/1888 (66%), Gaps = 46/1888 (2%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | ||||||||| || | | | ||| || ||||| |||| || ||||| ||| Sbjct 494640 TTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCC 494699 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| || || |||| || ||||| || ||| || || ||| ||| | || Sbjct 494700 GTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGC 494759 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | || ||||| | ||||| |||||||||||||| || || | ||||||||| Sbjct 494760 TCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCC 494819 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT- 62274 ||||| ||| || || || ||| ||||||| ||| || || | |||| | |||| Sbjct 494820 ATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGT-ATATG 494878 Query 62275 CTTCTGGAAGGTTT--GTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 ||| | | ||||| | || || || || |||| || | ||||| |||| || || Sbjct 494879 TTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCAT 494938 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGGTTAACTACTT 62391 ||||||| ||| || |||||| | | | | ||| || || | || || |||| Sbjct 494939 ATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAG-TGATGATTGACAACTT 494997 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 ||||||| || || | || | || || |||||||| || |||||||| | ||||| Sbjct 494998 GGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACT 495057 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 ||||||| |||| |||||| || || || ||||| ||||| ||||| | ||| || | Sbjct 495058 CATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGT 495117 Query 62512 TTCTAAGACCGTATGTT--CTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569 | | | ||| ||||| | ||||| || || | | ||| ||||| ||||| | Sbjct 495118 TGCGTACACC--ATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAGTTCCAGAGATCAGT 495175 Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATA 62629 || | ||||||||| ||||| || ||| | || ||| |||| Sbjct 495176 TGGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCATA 495235 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689 ||| || || | || | || ||||| | || |||||| || || ||||| || || || Sbjct 495236 TGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAGTA 495295 Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749 ||| ||||| || || | | ||| | | ||| || || || ||||| || Sbjct 495296 AATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAACG 495355 Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809 | | ||| || ||||| || || ||||| | |||||||| || || | ||||| | Sbjct 495356 CATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGCAA 495415 Query 62810 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869 ||| || | | || || || | ||||||| ||| | ||||| ||||| || | ||| Sbjct 495416 ATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAATT 495475 Query 62870 TC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC--- 62923 | | |||||| | |||| | | | |||| ||| ||| | ||| Sbjct 495476 ACGCGTAACAATTTTTGTGACTTCTTTAAGCCGTTT---AAAGTCATACGTTTTATCTGG 495532 Query 62924 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC 62983 | | ||| ||||||||||||| | || || | ||| || || |||||||| | | | Sbjct 495533 TGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCGGGTGC 495592 Query 62984 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043 | ||||| | || || || || | ||||||||| || || || || | ||| || || Sbjct 495593 GGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTGCTG 495652 Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103 |||||||||| | || || ||||| ||||| | ||| | || || || || || | ||| Sbjct 495653 ATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTACCTG 495712 Query 63104 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA---TTATAGATTTGTATCTCCT 63160 ||||| ||||| || ||| | |||| ||||| || | ||| | | ||| Sbjct 495713 CGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTAACCTTCT-TATTAGCACGTCC- 495769 Query 63161 TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCT 63220 |||| ||| ||| ||| ||| |||||||| || ||||| || | | || | Sbjct 495770 TTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGTAAACC 495829 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCAT 63277 ||||| | || |||||||| | |||||| ||| ||||| |||| || ||| ||| Sbjct 495830 CGGACACTTATGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCGACACGTCGCAT 495886 Query 63278 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 ||| ||||| || ||||| | || ||| |||| |||||||| | ||| || || || | Sbjct 495887 AAATAGATCCGGTATCCACA-AGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTTGC 495945 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | ||||| || || | ||| | ||| | | || || | |||||| ||||||| || | Sbjct 495946 CAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATAGA 496005 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 |||| | | || || || || || || ||||| | || | || |||||| Sbjct 496006 TGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATTAA 496065 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGC 63513 | ||||||| |||||| | | ||| || || | ||||| ||||| | || | || Sbjct 496066 ACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAGTGC 496125 Query 63514 CTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63571 || | || || || | | | ||| | ||| || || ||||| ||| ||||| Sbjct 496126 CT---TTCGCGCGTATGCAATGCACATT--CAAACCAATACCGCCTGCAGATTTGGAGAT 496180 Query 63572 TAATGCGCATCGTTTTAACG-TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAA 63630 ||||| || | | | || ||| | | || || || || ||| || | |||| ||| Sbjct 496181 CAATGCACAGTGATGTGCCGATGTGA-AAATACCGTCAATTGAATCGTCCACCATGGTAA 496239 Query 63631 GTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63690 | ||||| || |||| ||| | | | || | ||| |||| || || || | Sbjct 496240 GCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGG 496299 Query 63691 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63750 | || ||||| | |||||||| | ||||| || ||||| || | || ||||| Sbjct 496300 CATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTT 496359 Query 63751 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGT 63810 ||| || || | || || |||||||||||||| || || | |||||||||||| Sbjct 496360 CACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTGC 496419 Query 63811 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63870 || | || | ||| || || ||| | ||||||||||||||||| || || || Sbjct 496420 CATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAACCAA 496479 Query 63871 AGTCTCGTTCGTAAATAATAACCGAATT 63898 |||| || || || || ||| | || || Sbjct 496480 AGTCACGGTCATAGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 304 bits (336), Expect = 2e-77 Identities = 493/707 (70%), Gaps = 3/707 (0%) Strand=Plus/Plus Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||| | ||| || || ||||||||||| ||| || |||||||| || || | Sbjct 4094564 CAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAA 4094623 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 || || || | ||| |||| | |||||||| ||||| || || | | || || Sbjct 4094624 ATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATGAT 4094683 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 ||| ||| | ||| || |||| ||||||| |||||||||||||||||| Sbjct 4094684 TTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAA 4094743 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| || |||||||||||||||| |||| || || |||||||| | || ||||| Sbjct 4094744 ATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCAT 4094803 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || ||||| ||||||||||| || || || || || ||| || || || ||||| Sbjct 4094804 TAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATACCTTC 4094863 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TCCACTT 33766 || || ||||| ||||| | | || ||| | || || | | | | |||| Sbjct 4094864 CACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAAGC 4094923 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 | |||||||| ||||| ||||| |||||||||||| || ||||| || | ||| Sbjct 4094924 AAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAATA 4094983 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 ||| ||| || ||| |||| ||| |||||||| || | |||||||||||| ||||| Sbjct 4094984 GTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGGAATG 4095043 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 | ||| || || || || |||||||| |||||||| | ||||| |||| || || || Sbjct 4095044 CACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACCTC 4095103 Query 33947 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 || |||||||| ||||||| ||||| || || |||||| || |||||||| || Sbjct 4095104 CTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAGGC 4095163 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 ||||| ||| || |||| ||| | || || |||||||| ||||| Sbjct 4095164 TAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATATC 4095223 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||||| | ||||||||| || ||||||||||| || || ||||||| Sbjct 4095224 TTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629773733204160