Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq71 378 7e-100 seq7 316 2e-81 >seq71 Length=1348405 Score = 378 bits (418), Expect = 7e-100 Identities = 1209/1849 (65%), Gaps = 40/1849 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||||||||||| ||||| ||||| ||| | || || | | |||||||| || ||| Sbjct 494643 TCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCCGTT 494702 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || | |||| || ||||| || ||| ||| || || | || | || | Sbjct 494703 TTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGCTCG 494762 Query 36910 TCTA--TATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967 | | | ||||||| | ||||| |||||||| || || || || | || || |||| Sbjct 494763 GCCACGTGTATATTG--AACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCCA 494820 Query 36968 TTTCTAAAATACATTTTTGA-GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026 ||| | | | |||| || ||||||||||| || || || | | ||||| Sbjct 494821 TTT-TGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGTATATGT 494879 Query 37027 TCTGGTAAA-TCTAAATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 | |||| | | |||||| | ||||||||| |||| | ||| ||||| || || Sbjct 494880 TTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCATA 494939 Query 37084 TCATTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 |||| || ||||| | | ||| | || || | || | ||| |||| ||||| || Sbjct 494940 TCATCATCCCACAAACC-CAACTCGGTGAGATCGCGTAACAAGTGATGATTGACAACTTG 494998 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 || || || || | || | | |||||| ||||| ||| || ||||||| ||||| Sbjct 494999 GAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACTC 495058 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 |||||| | | ||||| | ||||| ||||| ||||| ||||| | | | || Sbjct 495059 ATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGTT 495118 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 | | |||||| || ||| ||| || | ||| |||| | ||| | ||| ||||| Sbjct 495119 GCGTACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAGTTCCAGAGATCAGTTGG 495178 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | || |||||| ||||||||||| ||||| || || |||| ||| | | |||||| Sbjct 495179 CGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCATATGT 495238 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 ||| |||| || || ||| ||| | ||| ||||| | ||| | |||| |||| || || Sbjct 495239 CTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAGTAAAT 495298 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 |||||||| |||||| ||| || | | ||| || || || ||| ||| | | | || Sbjct 495299 AGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAACGCAT 495358 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 ||| || || | || || ||||| || | || ||||| ||||| | |||| | ||| Sbjct 495359 TAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGCAAATT 495418 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT--- 37619 ||| | | || | ||||||| ||||| ||||| ||||| || | ||| Sbjct 495419 CGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAATTACG 495478 Query 37620 TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTAT---- 37675 |||| ||||| || | | | | || || || | ||||||| |||| Sbjct 495479 CGTAAC---AATTTTTGTGACT-TCTTTAAGCCGTTTAA-AGTCATACGTT-TTATCTGG 495532 Query 37676 --TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733 | ||| | | |||| | || || ||| ||| || ||||| || || || || Sbjct 495533 TGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTC-GGGTG 495591 Query 37734 ACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTT 37792 || ||| | ||| || ||||| | |||||| || |||| || || | ||| | Sbjct 495592 CGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTGCT 495651 Query 37793 GATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTT 37852 |||| ||| |||| |||| ||||||||| | || ||||| || || |||| | Sbjct 495652 GATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTACCT 495711 Query 37853 GAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--Attttttt 37910 | | || ||||| | ||| | |||| ||||||||| || ||| | | || Sbjct 495712 GCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTAACCTTCTTATTAGCACGTCCTT 495771 Query 37911 CTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCC 37970 ||| ||| |||| ||||||||| | || || | |||||||| || ||| || Sbjct 495772 CTT--GTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGTAAACC 495829 Query 37971 TGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAA 38030 ||||| | |||||||||||| ||||| |||||||| ||| || ||| |||||| Sbjct 495830 CGGACACTTATGTGGACACATTAGCGACCAGTCTTCATCGGCTTCGACACGTCGCATAAA 495889 Query 38031 TAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTAC 38090 || ||| |||| ||| || ||| ||||||||| | | | || ||||| || || Sbjct 495890 TAGATCCGGTATCCACAAGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTTGCCAGT 495949 Query 38091 ATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCG 38149 ||| |||||| || | ||| ||||| | || || ||||||||||| | ||| || | Sbjct 495950 ATT-TTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATAGATGG 496008 Query 38150 ACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATA 38209 | || || || | ||| | || || |||| || ||| | | |||||| | | Sbjct 496009 CAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATTAAACA 496068 Query 38210 TTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCT 38269 ||| | ||| || |||| |||||| || |||| ||| |||| | || ||| || | Sbjct 496069 CTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAGTGCCTT 496128 Query 38270 TAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGC 38327 | || ||||| | | | || ||| || || || |||||| ||| || || || || Sbjct 496129 TCGCGCGTATGCAATGCACAT--TCAAACCAATACCGCCTGCAGATTTGGAGATCAATGC 496186 Query 38328 GCATTGTTTTAACG-TATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAA 38386 || || | | || | | ||| ||||| || || || ||| || | || | || Sbjct 496187 ACAGTGATGTGCCGATGTGAAA-ATACCGTCAATTGAATCGTCCACCATGGTAAGCAGAA 496245 Query 38387 AACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTA 38446 | || |||| ||| || || | || |||| || || || |||||| Sbjct 496246 AGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGGCATGTG 496305 Query 38447 TGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGT 38506 | || | || || | | || |||||||| ||| | |||| ||||| | || | Sbjct 496306 TAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTTCACCAT 496365 Query 38507 GAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCT 38566 | ||||| | | || | ||||| ||| ||||| || | || | ||||| |||| Sbjct 496366 GTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTGCCATTCA 496425 Query 38567 GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 || || | |||||| ||| | |||||| | ||||||||| |||| Sbjct 496426 ACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATA 496474 >seq7 Length=4380649 Score = 316 bits (350), Expect = 2e-81 Identities = 494/701 (70%), Gaps = 13/701 (2%) Strand=Plus/Plus Query 11455 TAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTAT 11514 ||| || | ||| || || ||||||||||| | |||||| | ||||||||||| || Sbjct 4094561 TAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAAT 4094620 Query 11515 AAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC---AAT 11571 | || || || | ||| | || || || || | || || ||||| || || ||| Sbjct 4094621 TAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAAT 4094680 Query 11572 GATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACA 11631 |||| || | | || ||| ||| ||| |||| ||||||| |||||| ||||| Sbjct 4094681 GATT-TCAA--TAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACA 4094737 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 || ||||||||||| | ||| ||||||| ||||| ||||| ||||| ||||| || Sbjct 4094738 TGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCC 4094797 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA--GAAAAGAAT 11749 ||||| || || |||||||| | ||| || || | ||||| ||| ||||| ||| Sbjct 4094798 AGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAAT 4094857 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGAT 11806 | || ||||||||||||||||| | ||| | ||| ||| | | || || || Sbjct 4094858 A--CCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAA 4094915 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||| |||||||| || || |||||| ||| ||||| ||||| || Sbjct 4094916 ATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTG 4094975 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 ||||||| | ||| | | ||| | | ||||||||| ||||||| |||||||||| Sbjct 4094976 AATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATT 4095035 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||| | || |||||||| |||||||||||||||||||| |||||||||| | Sbjct 4095036 TCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACT 4095095 Query 11987 TGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 || || ||| | |||| ||| ||||||||||||| |||||||||||| | ||| Sbjct 4095096 TGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCA 4095155 Query 12047 AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCA 12106 ||||| |||| || ||| || || | ||| | | ||| | |||||||| Sbjct 4095156 AAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCA 4095215 Query 12107 TCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 || | |||||| || | ||| ||||| ||||| |||||||| Sbjct 4095216 TCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAA 4095256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468492167247680