Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq71 466 2e-126 seq7 331 1e-85 >seq71 Length=1348405 Score = 466 bits (516), Expect = 2e-126 Identities = 1252/1888 (66%), Gaps = 46/1888 (2%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | ||||||||| || | | | ||| || ||||| |||| || ||||| ||| Sbjct 494640 TTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCC 494699 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| || || |||| || ||||| || ||| || || ||| ||| | || Sbjct 494700 GTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGC 494759 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | || ||||| | ||||| |||||||||||||| || || | ||||||||| Sbjct 494760 TCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCC 494819 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT- 65067 ||||| ||| || || || ||| ||||||| ||| || || | |||| | |||| Sbjct 494820 ATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGT-ATATG 494878 Query 65068 CTTCTGGAAGGTTT--GTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 ||| | | ||||| | || || || || |||| || || ||||| |||| || || Sbjct 494879 TTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCAT 494938 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTT 65184 ||||||| ||| || |||||| | | | | ||| || || |||| || |||| Sbjct 494939 ATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAG-TGATGATTGACAACTT 494997 Query 65185 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 65244 | ||||| || || | || | || || |||||||| || |||||||| | |||| Sbjct 494998 GGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACT 495057 Query 65245 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 65304 ||||||| |||| |||||| || || || ||||| ||||| ||||| | ||| || | Sbjct 495058 CATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGT 495117 Query 65305 TTCTAAGACCGTATGTT--CTGATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGATCC 65360 | | | ||| ||||| | ||||| || || | ||| ||| ||||| ||||| Sbjct 495118 TGCGTACACC--ATGTTGCTTTATTTTCTCCTTCAATTCGGT--CCAGTTCCAGAGATCA 495173 Query 65361 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 65420 | || |||||| ||||| || ||| | || ||| || Sbjct 495174 GTTGGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCA 495233 Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 ||||| ||||| | || | || ||||| | ||||||||| || || ||||| || || Sbjct 495234 TATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAG 495293 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 ||||| |||||||| || | | ||| | | ||| || || || ||||| || Sbjct 495294 TAAATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAA 495353 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | ||| || ||||| || || ||||| | |||||||| || || | ||||| | Sbjct 495354 CGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGC 495413 Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660 ||| || | | || || || | ||||||| ||| | ||||| ||||| || | | Sbjct 495414 AAATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAA 495473 Query 65661 TTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATC- 65716 || | | |||||| | |||| | | | |||| ||| ||| | | ||| Sbjct 495474 TTACGCGTAACAATTTTTGTGACTTCTTTAAGCCGTTT---AAAGTCATACGTTTTATCT 495530 Query 65717 --TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 65774 | | ||| ||||||||||||| | || || | ||| ||||| |||||||| | | Sbjct 495531 GGTGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCGGGT 495590 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 | | ||||| | || || || || | ||||||||| || || || || | ||| || Sbjct 495591 GCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTGC 495650 Query 65835 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 |||||||||||| | || || ||||| ||||| | ||| | || || || || || | | Sbjct 495651 TGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTACC 495710 Query 65895 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA---TTATAGATTTGTATCTC 65951 || ||||| ||||| || ||| | |||| ||||| || | ||| | | || Sbjct 495711 TGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTAACCTTCT-TATTAGCACGTC 495768 Query 65952 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 66011 |||| ||| ||| ||| ||| |||||||| || ||||| || | | || Sbjct 495769 -CTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGTAAA 495827 Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTC 66068 || ||||| | || |||||||| | |||||| ||| ||||| |||| || ||| | Sbjct 495828 CCCGGACACTTATGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCGACACGTCGC 495884 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTT 66127 ||||| ||||| || ||||| | || ||| ||||||||||| | | ||| || || || Sbjct 495885 ATAAATAGATCCGGTATCCACA-AGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTT 495943 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 || ||||| || || | ||| | ||| | | || || |||||| ||||||| || Sbjct 495944 GCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATA 496003 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 ||||| | | || || || || || || ||||| | || | || ||||| Sbjct 496004 GATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATT 496063 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGC 66306 | | ||||||| |||||| | | ||||||||| || ||||| || |||| | | || Sbjct 496064 AAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAG- 496122 Query 66307 TTCCACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364 | || | || || || | | | ||| | ||| || || ||||| ||| ||||| Sbjct 496123 TGCCTTTCGCGCGTATGCAATGCACATT--CAAACCAATACCGCCTGCAGATTTGGAGAT 496180 Query 66365 TAATGCGCATCGTTTTAACG-TATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 66423 ||||| || | | | || | | | | || || || || ||| |||| |||| ||| Sbjct 496181 CAATGCACAGTGATGTGCCGATGTGA-AAATACCGTCAATTGAATCGTCCACCATGGTAA 496239 Query 66424 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483 | ||||| || |||| ||| | | | || | ||| |||| || || || | Sbjct 496240 GCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGG 496299 Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 66543 | || ||||| | |||||||| | ||||| || ||||| || | || ||||| Sbjct 496300 CATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTT 496359 Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603 ||| || || | || || |||||||||||||| || || | ||||| || ||| Sbjct 496360 CACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTGC 496419 Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 66663 || | || | ||| || || ||| | ||||||||||||||||| || || || Sbjct 496420 CATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAACCAA 496479 Query 66664 AGTCTCGTTCGTAAATAATAACCGAGTT 66691 |||| || || || || ||| | ||||| Sbjct 496480 AGTCACGGTCATAGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 331 bits (366), Expect = 1e-85 Identities = 499/707 (71%), Gaps = 3/707 (0%) Strand=Plus/Plus Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||| | ||| || |||||||||||||| ||| || |||||||| || || | Sbjct 4094564 CAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAA 4094623 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || || || | ||| |||| | |||||||| ||||| || || || | || || Sbjct 4094624 ATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATGAT 4094683 Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165 || | | ||| | ||| || | | ||||||| |||||||||||||||||| Sbjct 4094684 TTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAA 4094743 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 ||| || || ||||||||||||| |||| || ||||||||||| | || ||||| Sbjct 4094744 ATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCAT 4094803 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 || ||||| ||||||||||| || || |||||||| |||| || ||||| ||||| Sbjct 4094804 TAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATACCTTC 4094863 Query 36286 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATGTA-TCCACTT 36342 || || ||||| ||||| | | || ||| | || ||| | | | | |||| Sbjct 4094864 CACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAAGC 4094923 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 | |||||||| ||||| ||||| |||||| || || |||||||| || | ||| Sbjct 4094924 AAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAATA 4094983 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 ||| ||| || ||| |||| ||||||||| || || | |||||||||||| ||||| Sbjct 4094984 GTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGGAATG 4095043 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 | ||| || || || ||||||||||| |||||||| | ||||| |||| || || || Sbjct 4095044 CACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACCTC 4095103 Query 36523 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 || |||||||| ||||||| ||||| || || || ||| || |||||||| || Sbjct 4095104 CTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAGGC 4095163 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATC 36642 ||||| ||| || |||| ||| || || || |||||||| ||||| Sbjct 4095164 TAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATATC 4095223 Query 36643 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 |||||| | ||||||||| || ||||||||||| || || ||||||| Sbjct 4095224 TTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658126958264480