Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq71 194 2e-44 seq10 129 6e-25 seq558 91.5 1e-13 >seq71 Length=1348405 Score = 194 bits (214), Expect = 2e-44 Identities = 693/1070 (65%), Gaps = 40/1070 (4%) Strand=Plus/Plus Query 152753 CGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGA 152812 ||| || || || ||||||||||| ||||| || || ||| || || | ||| | || Sbjct 494678 CGTGCGTAAGTAATACATGCCCGTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGA 494737 Query 152813 CGCCATCTTAGCCAAAGTAGGG-TCGGCCATGTACACGTTAAACGATTGACTTTGATCAA 152871 | | ||| |||| ||| ||| ||||||| || | || |||||||| |||||||| | Sbjct 494738 GGTGAGCTT-GCCATAGTTGGGCTCGGCCACGTGTATATTGAACGATTGGCTTTGATCGA 494796 Query 152872 TAAATGCGCCTCTATCTGCTGCCATGTCGATCATGAATTTTCCGTTGTTGTGCCAGCATT 152931 | |||||||| | |||||| ||||| | ||| | ||| | || | | | Sbjct 494797 TGAATGCGCCACGATCTGCAGCCATTTTGATGGAGGTTTTCAC-------TGAAATC--T 494847 Query 152932 CCCAGATTGTCATGTACAGCTTTT-TA-ATGTTGTCGGGAA--TTTCATCTATGGAAGCT 152987 |||| | ||| ||||||| | || ||||| |||| | ||||| ||| | Sbjct 494848 CCCAAACAGTCTTGTACAGATCGCGTATATGTT-TCGGTATGGTTTCA---ATGTTTTGT 494903 Query 152988 ATCGATCCTCGGTTTGCCATGATCCTTTTCCGCATACTACTTGTGTACAGATTCAATGCG 153047 || || || || | || || || | || |||| | ||| | ||| || Sbjct 494904 ATAGAACCACGATGTGTTATAATGGTATTTTTCATATCATCATCCCACAAACCCAACTCG 494963 Query 153048 ATTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAATACACGTCTC 153107 | ||||| | ||||| | ||||||||||| ||||| ||||| | ||||| | Sbjct 494964 GTGAGATCGCGTAACAAGTGATGATTGACAACTTGGAATTCACCCGAAAGCACACGACGT 495023 Query 153108 AAAAACAAATT---ACTGTGAAACGGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCG 153164 | | | ||| | ||| |||||||||||||||| || || | ||||||||| Sbjct 495024 GTATAAATATTCGAAGTGT---ACGGTTCAAACGACTCATTATTGCCCATAATTTGTGCG 495080 Query 153165 GTCGTGGCCGTCGGCATGTACGCCACAAGCAAC---GAATTACGTAATCCGTGTTTTTGT 153221 || | || || ||||| || |||||||| || || |||| || |||| | | Sbjct 495081 GTAGAAGCAGTTGGCAT---CGGTGCAAGCAACAATGAGTTGCGTACACCATGTTGCTTT 495137 Query 153222 ATGTTCATCTTCAATTGTGACCAGTCCCATAACGAAGTAGGTATCGCATTCCACAAATCG 153281 || ||| |||||||| | ||||| ||| | ||| || | || ||||| || Sbjct 495138 ATTTTCTCCTTCAATTCGGTCCAGTTCCAGAGATCAGTTGGCGTTTTATCCCACATGTCA 495197 Query 153282 TATTGCAATATCCCTTGGCTAGCTTTGCTACCGGCAAACGTGCTATACGGCTCAC---TG 153338 ||||| | ||| || | ||| || ||| || | || || | || | Sbjct 495198 TATTGTAGTATACCCTTGCTGACTGGTGAACCTTCATATGTCTCGTAAGTGCCATATTTT 495257 Query 153339 TCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGT 153398 |||| ||| || ||||||| || | ||| ||| || | ||||||| | || ||| Sbjct 495258 TCAG---CCAATTCACAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGT 495314 Query 153399 TTGTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCG 153458 | |||| || || |||| || |||| || | |||| | | || || ||| Sbjct 495315 TGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAACGCATTAAAATTAAGGCGTCG 495374 Query 153459 GCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCT 153518 || |||||||| |||||||| || ||||||||||| |||| ||| ||||| || || | Sbjct 495375 GCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGCAAATTCGATTTCTTGGCCTCC 495434 Query 153519 TCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACC 153578 | ||||| |||| ||| || ||||| || ||| || | ||| ||| Sbjct 495435 GGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAATTACGCGTAACAATTTTTGTG 495494 Query 153579 ACAGAATGCAACAGTTGAAAATCAAACGTTCCAT---TAATGATATATTTGTTGACGGCA 153635 || | | | ||| ||| ||| ||||| || ||| ||| |||| | || Sbjct 495495 ACTTCTTTAAGCCGTTTAAAGTCATACGTTTTATCTGGTGTGACATACATGTTCAATGCT 495554 Query 153636 ATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCA 153695 || || || || |||||||| || |||||||| ||| |||||| || ||||| | | Sbjct 495555 ATTGAGGCTAAATTGCAAACAGCTACCTCGTCGGGTGCGGAATATTCAACAATTTCGGTA 495614 Query 153696 CACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCG 153755 |||||||| || ||||| ||| ||| ||| ||||| || || | || ||||| Sbjct 495615 CACAAATTACTACATTTAATCGTGCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCA 495674 Query 153756 TCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805 || || || | |||||| ||||||||||| || | || ||| ||||| Sbjct 495675 TCTTTATACAACATGTACGGTGTGCCGGTCTCTACCTGCGATTCAATAAT 495724 >seq10 Length=3877145 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| || |||| |||||||| || || ||||| |||||| | Sbjct 2844588 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 2844529 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || |||||||| ||| |||| | |||||| ||||| || || Sbjct 2844528 AAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 2844469 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | |||| | | ||| | || |||| || || || Sbjct 2844468 ATTCCTTCTTTGTC-CTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 2844410 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| ||||| || || ||||| |||||||| Sbjct 2844409 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 2844362 >seq558 Length=79715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | |||||||| | |||||||| || |||||||| || || | Sbjct 66408 CCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCC 66349 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || | ||||| || ||| | || | ||| || ||||| || || Sbjct 66348 AATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGA 66289 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || |||||| ||| | ||||| | || || | || || ||| Sbjct 66288 ATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACC 66229 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 |||| || | || || || || | ||||||||||| |||||||| || Sbjct 66228 TCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCATTGC 66179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496029449142400