Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq71 499 4e-136 seq7 336 3e-87 >seq71 Length=1348405 Score = 499 bits (552), Expect = 4e-136 Identities = 1259/1888 (67%), Gaps = 46/1888 (2%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | ||||||||| || | | | ||| || ||||| |||| || ||||| ||| Sbjct 494640 TTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCC 494699 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| || || |||| || || || || ||| || || ||| ||| | || Sbjct 494700 GTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGC 494759 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | || ||||| | ||||| |||||||||||||| || || | ||||||||| Sbjct 494760 TCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCC 494819 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT- 78946 ||||| ||| || || || ||| ||||||| ||| || || | |||| | |||| Sbjct 494820 ATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGT-ATATG 494878 Query 78947 CTTCTGGAAGGTTT--GTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 ||| | | ||||| | || || || || |||| || || ||||| |||| || || Sbjct 494879 TTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCAT 494938 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTT 79063 || |||| ||| || |||||| | | | | ||| || || |||| || |||| Sbjct 494939 ATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAG-TGATGATTGACAACTT 494997 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 | ||||| || || | || | || || |||||||| || || ||||| | ||| | Sbjct 494998 GGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACT 495057 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 ||||||| |||| |||||| || || || || |||||||| ||||| | ||| || | Sbjct 495058 CATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGT 495117 Query 79184 TTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTC---CCAATCCCAAAGATCAG 79240 | | | ||| | | | ||||| || || | |||| ||| | ||| ||||||| Sbjct 495118 TGCGTACACCATGTTGCTTTATTTTCTCCTTCA---ATTCGGTCCAGTTCCAGAGATCAG 495174 Query 79241 ACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGT 79300 || || ||| | ||||||||||| ||||| || || | ||| ||| | Sbjct 495175 TTGGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCAT 495234 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 |||| || |||| || | ||||| || ||||||||||| || || ||||| || || | Sbjct 495235 ATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAGT 495294 Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAAT 79420 |||| |||||||| || | | ||| | | ||| || || || ||||| || Sbjct 495295 AAATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAAC 495354 Query 79421 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 79480 | | ||| || ||||| || || ||||| | |||||||| || || | ||||| | Sbjct 495355 GCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGCA 495414 Query 79481 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 79540 ||| || | | || || || | ||||||| ||| | ||||| ||||| || | || Sbjct 495415 AATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAAT 495474 Query 79541 T---CCTGACTATTACTTTGACCACATCCTTTA----GTTTGAGAAAATCAAATCGTCCA 79593 | | | || ||| | |||| | ||||| |||| ||| ||| | | | Sbjct 495475 TACGCGTAACAATTTTTGTGAC----TTCTTTAAGCCGTTT---AAAGTCATACGTTTTA 495527 Query 79594 TC---TATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTA 79650 || | | ||| |||||||||| || | || || | ||| ||||| |||||||| | Sbjct 495528 TCTGGTGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCG 495587 Query 79651 GCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | | | ||||| | ||||| || || | |||||||| ||||| || || | ||| Sbjct 495588 GGTGCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTC 495647 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 || |||||||||||| | || || ||||| ||||| | ||| |||| || || || || Sbjct 495648 TGCTGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCT 495707 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA---TTATAGACTTGTAT 79827 | ||| ||||| ||||| || ||| | |||| ||||| || | | | | | Sbjct 495708 ACCTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTAACCTTCT-TATTAGCAC 495765 Query 79828 CTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCT 79887 || |||| ||| |||| ||||||| |||||||| || ||||| || || | | Sbjct 495766 GTC-CTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGT 495824 Query 79888 AATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTC 79947 || || ||||| | | |||||||| | |||||| ||| |||| | | || ||| | Sbjct 495825 AAACCCGGACACTTATGTGGACACATTAGCGACCAGTCTTCATCGGCTTCGACACGTCGC 495884 Query 79948 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTT 80006 ||||| ||||| || ||||| | || ||| |||| |||||| | | |||||| || || Sbjct 495885 ATAAATAGATCCGGTATCCACA-AGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTT 495943 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || ||||| || || | ||| | ||| | | || || | |||||| ||||||| || Sbjct 495944 GCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATA 496003 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 ||||| | | || || || || || || ||||| | || | || ||||| Sbjct 496004 GATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATT 496063 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGC 80185 | | ||||||| |||||| | | ||||||||| || ||||| || |||| | | || Sbjct 496064 AAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAG- 496122 Query 80186 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 80243 | || | || || || | | | ||| | ||| || || ||||| ||| ||||| Sbjct 496123 TGCCTTTCGCGCGTATGCAATGCACATT--CAAACCAATACCGCCTGCAGATTTGGAGAT 496180 Query 80244 TAATGCGCATCGTTTTAACG-TATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 ||||| || | | | || | | | | || || || || ||| || | |||| ||| Sbjct 496181 CAATGCACAGTGATGTGCCGATGTGA-AAATACCGTCAATTGAATCGTCCACCATGGTAA 496239 Query 80303 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 80362 | ||||| || |||| ||| | | | || | ||| |||| || || || | Sbjct 496240 GCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGG 496299 Query 80363 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 80422 | || ||||| | ||||| || | ||||| || ||||| || | || ||||| Sbjct 496300 CATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTT 496359 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 ||| || || | || || |||||||||||||| || || | ||||| || ||| Sbjct 496360 CACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTGC 496419 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 80542 ||| | || | ||| || || ||| | ||||||||||||||||| || || || Sbjct 496420 CATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAACCAA 496479 Query 80543 AGTCTCGTTCGTAAATAATAACCGAGTT 80570 |||| || || || || ||| | ||||| Sbjct 496480 AGTCACGGTCATAGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 336 bits (372), Expect = 3e-87 Identities = 500/707 (71%), Gaps = 3/707 (0%) Strand=Plus/Plus Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||| | ||| || |||||||||||||| ||| || |||||||| || || | Sbjct 4094564 CAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAA 4094623 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 || || || | ||| |||| | |||||||| ||||| || || || | || || Sbjct 4094624 ATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATGAT 4094683 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 ||| ||| | ||| || || | ||||||| |||||||||||||||||| Sbjct 4094684 TTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAA 4094743 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 ||| || |||||||||||||||| ||||| || ||||||||||| | || ||||| Sbjct 4094744 ATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCAT 4094803 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 || ||||| ||||||||||| || || |||||||| ||| || || || ||||| Sbjct 4094804 TAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATACCTTC 4094863 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--CTGTCATGTA-TCCACTT 50144 || || ||||| |||| | | || ||| | | || || | | | | |||| Sbjct 4094864 CACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAAGC 4094923 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 | |||||||| ||||| ||||| |||||||||||| || ||||| || | ||| Sbjct 4094924 AAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAATA 4094983 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 ||| ||| || ||| |||| ||| |||||||| || | |||||||||||| ||||| Sbjct 4094984 GTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGGAATG 4095043 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 | ||| || || || || |||||||| |||||||| | ||||| |||| || || || Sbjct 4095044 CACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACCTC 4095103 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 || ||||||||| ||||||| ||||| || || || ||| || |||||||| || Sbjct 4095104 CTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAGGC 4095163 Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 ||||| ||| || ||||| ||| ||| || || |||||||| ||||| Sbjct 4095164 TAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATATC 4095223 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 |||||| | ||| ||||| || ||||||||||| || || ||||||| Sbjct 4095224 TTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718218772578080