Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7 237 2e-57 seq4 86.0 6e-12 >seq7 Length=4380649 Score = 237 bits (262), Expect = 2e-57 Identities = 479/699 (69%), Gaps = 24/699 (3%) Strand=Plus/Plus Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765 |||||| | ||| || ||||| | |||||| | | ||||||||||| |||| ||||| Sbjct 4094570 ATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAAATTTAC 4094629 Query 13766 AGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGT 13825 || | | ||||| ||||||| || || ||||| || ||| ||| Sbjct 4094630 GGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGA---AATGATTTC 4094686 Query 13826 AATAATC---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 |||||| |||||| || | | | | ||||| ||| || ||||| || ||||| Sbjct 4094687 AATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAAATC 4094746 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 |||||| || ||||| |||| || || || || ||||| ||||| || ||||| || Sbjct 4094747 ACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCATTAA 4094806 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAGAATATTCCCTCA 14000 || |||||||| | ||| || || | ||||| | | | ||||| |||| || || Sbjct 4094807 ACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATA--CCTTCC 4094864 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060 || || ||||| || |||| ||||| ||||| ||| || || ||||| Sbjct 4094865 ACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAAGCA 4094924 Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA- 14119 ||||| || | || || | | ||| |||||||||||||| |||||||| Sbjct 4094925 AGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAATAG 4094984 Query 14120 TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 |||||| | ||| | | ||| ||| |||||||| || | || ||||||||||| || Sbjct 4094985 TTCCTT-TGTTTCGAATCCTT--AATATATGTATCGATTAATATACTATACATTTCGGAA 4095041 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 || | ||| |||||||| || ||||| ||||| || || | || || | ||| || Sbjct 4095042 TGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACC 4095101 Query 14238 TCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 ||| || | |||| ||| | ||||| |||||||| ||||||||| || |||||||| Sbjct 4095102 TCCTGACT-GAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAA 4095160 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGA 14353 || |||| || | || | | ||| |||||||| |||| | |||||| Sbjct 4095161 GGCTAATACGTGTGAGAT---GAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATC 4095217 Query 14354 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 | ||| ||||||||||| ||||| |||||||||||||| Sbjct 4095218 CATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAA 4095256 >seq4 Length=6961367 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/146 (73%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 131659 GATCCAAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGATATGCATAACGGT 131718 |||||||||||||||||||| || || |||||||| ||| | ||| ||| | || Sbjct 6207948 GATCCAAAAAAGATGCATAACGGTACCATAGAATATACATCTCGAGACGCACATCATGGA 6208007 Query 131719 GTATCCCCGTCTAGGCGAGGAGATTTAGAAATTTTAGGATATTGTATAATAAAATGGTTA 131778 ||| || | | ||| | ||| || ||||| ||||| ||| ||| || |||||| | Sbjct 6208008 GTA---CCTACAATGCGTGCAGACTTCGAAATATTAGGGTATAATATTATCGAATGGTCA 6208064 Query 131779 GGCGGTAAATTGCCATGGGAAAATGA 131804 |||| | ||||||| |||| ||| || Sbjct 6208065 GGCGTTCAATTGCCTTGGGTAAAAGA 6208090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479694586944800