Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7 255 6e-63 >seq7 Length=4380649 Score = 255 bits (282), Expect = 6e-63 Identities = 495/719 (69%), Gaps = 24/719 (3%) Strand=Plus/Plus Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | ||| || | |||||| | ||| || ||||| | |||||| | | ||| Sbjct 4094550 CCCAGCTCGACTAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAA 4094609 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 |||||||| |||| ||||| || | | |||||| ||||||| || || ||| Sbjct 4094610 TTCATACCAATTAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACA 4094669 Query 13594 GCCTCGTTTATAATAATCTTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTA 13650 || ||| ||| || | |||||| |||||| || | | | | ||||| | Sbjct 4094670 GCTTCGGA---AATGATTTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGA 4094726 Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710 || || ||||| || ||||||||||| || ||||| |||| || || || || ||| Sbjct 4094727 AACATCAAACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAA 4094786 Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770 || ||||| || ||||| || || |||||||| | ||| || || | || || ||| Sbjct 4094787 AACGTTAAGCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCA 4094846 Query 13771 --GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTT 13828 ||||| |||| || || || || ||||| || |||| ||||| ||||| ||| Sbjct 4094847 CTGAAAAAAATA--CCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCG 4094904 Query 13829 TTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 13888 || || ||||| ||||| || | || || | | ||| |||| Sbjct 4094905 ACTTTGAGGAAATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTT 4094964 Query 13889 CGATTGCATTGAATAAAT-GTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAA 13945 | || ||||||||||||| ||||||| | ||| | | ||| ||| |||||||| || | Sbjct 4094965 CAATAGCATTGAATAAATAGTTCCTT-TGTTTCGAATCCTT--AATATATGTATCGATTA 4095021 Query 13946 GTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATC 14005 || ||||||||||| || || | ||| || ||||| || ||||| ||||| ||||| | Sbjct 4095022 ATATACTATACATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAAC 4095081 Query 14006 TAGCTTCTGACCATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATA 14064 || |||| ||| |||||| || | |||| ||| | || || |||||||||||| Sbjct 4095082 GTGCCTCTGTAACTTGGACCTCCTGACT-GAATCGTTCAACTAAATTCTCATTAACAATA 4095140 Query 14065 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT-- 14122 |||||| || |||||||| || |||| || | || | | ||| |||||||| Sbjct 4095141 CCATCAGATGCGGCAAAAAAGGCTAATACGTGTGAGAT---GAAATGCCGTTCATTGTCA 4095197 Query 14123 -TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 |||| | |||||| | | ||| ||||||||||| ||||| |||||||||||||| Sbjct 4095198 GTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAA 4095256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478555466290080