Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq48 118 8e-22 seq10 118 8e-22 >seq48 Length=1730007 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||||||||||||| || ||||||||| | ||||| |||||| Sbjct 776898 CCACCACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 776839 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||||||||| ||||| || ||||| ||||||||||| | || Sbjct 776838 AAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 776779 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || || ||||||| | | | ||||| | |||||| Sbjct 776778 ATACCCTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 776719 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || || || || || |||| ||||| || ||||| |||||| Sbjct 776718 TCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCATT 776671 >seq10 Length=3877145 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || |||||||| | || |||||||| | ||||||||||| Sbjct 2845501 GCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGA 2845442 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| |||||| |||| ||||||||||| |||||||| ||||| || |||||||| | || Sbjct 2845441 CAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGG 2845382 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | || || | | | |||||| | ||||| Sbjct 2845381 GATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGAC 2845322 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || || || ||||| || |||||||| Sbjct 2845321 CTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | ||| |||||||| | |||||| || ||| Sbjct 2845272 CCACCACGGAGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGAC 2845213 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| ||||||||||| |||||||| ||||| || |||||||| | || Sbjct 2845212 AGGGTGCGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGA 2845153 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || ||| || ||| || Sbjct 2845152 ATGCCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACT 2845093 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| ||||| ||||| || || |||||||| |||||||| Sbjct 2845092 TCCAAGGTTATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || |||||| || | |||||||||||| Sbjct 2844588 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 2844529 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| |||| |||||| |||||||| || || || |||||||| | || Sbjct 2844528 AAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 2844469 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| ||| |||| || | ||| || ||| | || || Sbjct 2844468 ATTCCTTCTTTGTC-CTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 2844410 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | || ||||| || ||||||||||| Sbjct 2844409 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 2844359 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | || ||||||||| | ||||| |||||| Sbjct 2845044 CCACCACGGAGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGAC 2844985 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| ||| |||| |||||||| ||||| || ||||| || || |||||||| | || Sbjct 2844984 AATGTGCGTCCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGA 2844925 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || || |||| || | | | ||| || || || || Sbjct 2844924 ATACCCTCTTTGTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACC 2844865 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || | ||||| || || |||||||| Sbjct 2844864 TCCAGAGTAATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 ||||||| || || | || ||||||||||| || ||||| || | |||||| |||| Sbjct 2847115 CGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGG 2847056 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| |||||| | || || | || |||||||| || ||||||||||||||||| | | Sbjct 2847055 ACAAAGTACGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGATCTGGTG 2846996 Query 43001 GCACACCTTCTTTTTC 43016 | | ||| || || || Sbjct 2846995 GAATACCCTCCTTATC 2846980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381343701667176