Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004066.1 Length=36798 Score E Sequences producing significant alignments: (Bits) Value seq884 143 6e-30 seq641 143 6e-30 seq1321 104 5e-18 seq273 95.1 3e-15 >seq884 Length=19560 Score = 143 bits (158), Expect = 6e-30 Identities = 183/249 (73%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 8356 GCAGTTGCCACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAACGCTAATGGAGAAAGA 8415 ||||||| | ||||||||||| || || || |||| |||| || || ||| || Sbjct 871 GCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGA 930 Query 8416 GAAGCTGACTTTATCAGTTGTGTTATTTGGGGTAAATCAGCCGAAAACTTGGCCAATTGG 8475 ||||| || ||||||| ||||| |||||| |||| | || |||| |||| |||| Sbjct 931 GAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTAT 990 Query 8476 ACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAGACTCGAAACTATGAGAAC 8535 |||| |||||| |||| | |||||| |||| | || || ||||| || ||||| ||| Sbjct 991 ACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAAC 1050 Query 8536 CAACAAGGGCAGCGTGTTTATATTACGGAGGTTG-TCGCAAGTAATTTCCAAGTACTAGA 8594 |||||||| || ||||| ||| | || || |||| | || || | ||||||| || |||| Sbjct 1051 CAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAG-AGTTTCCAATTATTAGA 1109 Query 8595 ---AAAAAG 8600 |||||| Sbjct 1110 GCCAAAAAG 1118 >seq641 Length=27874 Score = 143 bits (158), Expect = 6e-30 Identities = 183/249 (73%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 8356 GCAGTTGCCACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAACGCTAATGGAGAAAGA 8415 ||||||| | ||||||||||| || || || |||| |||| || || ||| || Sbjct 27004 GCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGA 26945 Query 8416 GAAGCTGACTTTATCAGTTGTGTTATTTGGGGTAAATCAGCCGAAAACTTGGCCAATTGG 8475 ||||| || ||||||| ||||| |||||| |||| | || |||| |||| |||| Sbjct 26944 GAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTAT 26885 Query 8476 ACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAGACTCGAAACTATGAGAAC 8535 |||| |||||| |||| | |||||| |||| | || || ||||| || ||||| ||| Sbjct 26884 ACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAAC 26825 Query 8536 CAACAAGGGCAGCGTGTTTATATTACGGAGGTTG-TCGCAAGTAATTTCCAAGTACTAGA 8594 |||||||| || ||||| ||| | || || |||| | || || | ||||||| || |||| Sbjct 26824 CAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAG-AGTTTCCAATTATTAGA 26766 Query 8595 ---AAAAAG 8600 |||||| Sbjct 26765 GCCAAAAAG 26757 >seq1321 Length=4872 Score = 104 bits (114), Expect = 5e-18 Identities = 232/339 (68%), Gaps = 26/339 (8%) Strand=Plus/Plus Query 35609 TGGATTGCGGCATATCCAAATTATGAAGTAACACCAGTTCCAAACTATAGCT-TTTTCCC 35667 ||||| || | ||||||| |||||||||| ||||| |||||| || | | |||||| Sbjct 2398 TGGATGGCAGAATATCCAGATTATGAAGTGACACCTTATCCAAATTACAATTATTTTCCT 2457 Query 35668 AAGTATGGACGGAATTTCAGTATTC--CAGTTCACATCAACTTATGTTGCTGGCGGACTT 35725 | || | ||| || ||||| |||||||| ||||| || ||||| || || || Sbjct 2458 TCATTTGAA---AATATCGGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGAGGGCTA 2514 Query 35726 GATGGAAATGTTGATTTAACAGGAATCACAGATAATGG--ATACGGAAAACAGCAAGGCC 35783 ||||| || |||||||||||||| || || |||||||| |||| ||| | || || Sbjct 2515 GATGGTAACGTTGATTTAACAGGTATTACTGATAATGGTTATAC---AAAGAATAA--CC 2569 Query 35784 AAGAAGTTAAACCCGATACTGCTACACCGGCCATTGAAAATGGTAAAGAAGCC--AATGA 35841 || || ||| | || ||||| || ||||| || || ||| | || | Sbjct 2570 AACCAG--CAAC---AAAC----ACACCAGCAATTGATGCAGGGGAAAAAGTCGAAAATA 2620 Query 35842 AGTTAAAGGAAACGATGTAGAAGTTGGAATGACGGTTAAAGTAAACTTTGGCGCTAAGAA 35901 | || | |||||| |||| || || |||||||| || ||| ||| | | Sbjct 2621 CGCCAA--GTTCCGATGTTAAAGTCGGCGATACTGTTAAAGTGAAATTTAGCGTTGATGC 2678 Query 35902 TTATGCCACAGGAGAAACAATTCCTCAATGGGTAAAAGG 35940 || || ||||| ||| | ||||| |||||||||||||| Sbjct 2679 TTGGGCTACAGGTGAAGCTATTCCGCAATGGGTAAAAGG 2717 >seq273 Length=32108 Score = 95.1 bits (104), Expect = 3e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 28183 TGCCTGGGAAGCGGGTATGAAGTTTATTGGCGGAATTGGAGATTGGATTAAAAAACATAA 28242 ||| ||||||||| | ||||| | | || ||||| |||||||| | ||||||| Sbjct 4679 TGCATGGGAAGCGACGAAAGAGTTTGTCAGTGGTATTGGTGATTGGATACGAGAACATAA 4620 Query 28243 AGGTCCAATCCGTGTCGACAGAAAACTTTTAACTCCCGCTGGTAATGCCATTATGAATGG 28302 |||||| || || ||| ||||||||||||| ||| |||||||| || |||||| ||| Sbjct 4619 AGGTCCTATTAGTTACGATAGAAAACTTTTAATTCCAGCTGGTAAAGCGATTATGGGTGG 4560 Query 28303 TTTGAAT 28309 ||| ||| Sbjct 4559 TTTAAAT 4553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117624216584640