Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq71 477 1e-129 seq7 313 3e-80 >seq71 Length=1348405 Score = 477 bits (528), Expect = 1e-129 Identities = 1250/1888 (66%), Gaps = 46/1888 (2%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||| | ||| || || || | | | ||| | ||||| |||| || |||||||| Sbjct 494640 TTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCC 494699 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| || || |||| || ||||| || ||| || || ||| |||| | || Sbjct 494700 GTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGC 494759 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 ||||| | ||| ||||| | ||| || |||||||||||||| || || | ||||||||| Sbjct 494760 TCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCC 494819 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 71030 ||||| ||| || || || ||| ||||||| ||| || || | |||| || ||| Sbjct 494820 ATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGTA-TATG 494878 Query 71031 TTCTGGAA-GGTTTGTAT--TCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGAT 71087 || || | ||||| || | || || || |||| || || ||||| ||||||| || Sbjct 494879 TTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCAT 494938 Query 71088 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGAGGATTAACTACTT 71146 || |||| ||| || |||||| | | | | ||| || ||| |||| || |||| Sbjct 494939 ATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAG-TGATGATTGACAACTT 494997 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 | ||||| || || | || | ||| || |||||||| || |||||||| | |||| Sbjct 494998 GGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACT 495057 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 ||||||| |||| |||||| || || || ||||| ||||| ||||| | ||| | | Sbjct 495058 CATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGT 495117 Query 71267 TTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC---CCAATTCCAAAGATCCG 71323 | | | ||||||| ||||| || || | |||| ||| ||||| ||||| | Sbjct 495118 TGCGTACACCATGTTGCTTTATTTTCTCCTTCA---ATTCGGTCCAGTTCCAGAGATCAG 495174 Query 71324 ATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCAT 71383 ||| || || || || | ||| ||| ||| Sbjct 495175 TTGGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCAT 495234 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 |||| ||||| | || | |||||| || | ||||||||| || || ||||| ||||| | Sbjct 495235 ATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAGT 495294 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503 |||| |||||||| || | | ||| | | ||| || || || ||||| || Sbjct 495295 AAATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAAC 495354 Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 | | ||| || ||||| || || ||||| | ||||||||| || || | |||| | Sbjct 495355 GCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGCA 495414 Query 71564 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 71623 ||| || | | || || || | ||||||| ||| | ||||| ||||| || | || Sbjct 495415 AATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAAT 495474 Query 71624 TTC---TGACTATTACTTTGACCACATCCTTTA----GTTTGAGAAAATCAAATCTCCCA 71676 | | | || ||| | |||| | ||||| |||| ||| ||| | | | Sbjct 495475 TACGCGTAACAATTTTTGTGAC----TTCTTTAAGCCGTTT---AAAGTCATACGTTTTA 495527 Query 71677 TCTATT---ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 71733 ||| | ||| ||| |||||| || | || || | ||| ||||| |||||||| | Sbjct 495528 TCTGGTGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCG 495587 Query 71734 GCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 71793 | ||| ||||| | |||||| || || | ||||||||| || || || || | ||| Sbjct 495588 GGTGCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTC 495647 Query 71794 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCA 71853 || |||||||||||| | || || ||||| ||||| | || |||| || || || || Sbjct 495648 TGCTGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCT 495707 Query 71854 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTT-GTATCT 71912 | ||| ||||| ||||| || ||| | |||| ||||| | ||||| || | Sbjct 495708 ACCTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTA--ACCTTCTTATTAGCA 495764 Query 71913 CTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT 71970 | | |||| ||| |||| ||||||| |||||||| || ||||| | | | | Sbjct 495765 CGTCCTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGT 495824 Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030 || || ||||| | || |||||||| | ||||| ||| |||| | | || ||| | Sbjct 495825 AAACCCGGACACTTATGTGGACACATTAGCGACCAGTCTTCATCGGCTTCGACACGTCGC 495884 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||||| ||||| || ||||| | || ||| |||| |||||| | | |||||| || || Sbjct 495885 ATAAATAGATCCGGTATCCACA-AGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTT 495943 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || ||||| || || | ||| | ||| | | || || | |||||| ||||||| || Sbjct 495944 GCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATA 496003 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 ||||| | | || || || || || || ||||| | || | || ||||| Sbjct 496004 GATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATT 496063 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGC 72268 | | ||||||| |||||| | | ||||||||| | ||||| || |||| | | || Sbjct 496064 AAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAG- 496122 Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 | || | || || || | ||| ||| | ||| || || ||||| ||| ||||| Sbjct 496123 TGCCTTTCGCGCGTATGCAATGCACATT--CAAACCAATACCGCCTGCAGATTTGGAGAT 496180 Query 72327 TAATGCGCATCGTTTTAACG-TATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 ||||| || | | | || | | | | || || || || ||| |||| |||| ||| Sbjct 496181 CAATGCACAGTGATGTGCCGATGTGA-AAATACCGTCAATTGAATCGTCCACCATGGTAA 496239 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 | ||||| || |||| ||| | | | || | ||| |||| || || || | Sbjct 496240 GCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGG 496299 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 | || ||||| | ||||| || | ||||| || ||||| || | || ||||| Sbjct 496300 CATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTT 496359 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 |||||| || | || || ||||||||||| || || || | ||||| || ||| Sbjct 496360 CACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTGC 496419 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 ||| | || | ||| || || ||| | ||||||||||||||||| || || || Sbjct 496420 CATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAACCAA 496479 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATT 72653 |||| || || || || ||| | || || Sbjct 496480 AGTCACGGTCATAGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 313 bits (346), Expect = 3e-80 Identities = 405/555 (73%), Gaps = 7/555 (1%) Strand=Plus/Plus Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 ||||||| ||||||||||||||||||||| || ||||||||||| |||| |||| Sbjct 4094718 AAATGTTGAAACATCAAACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGC 4094777 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 || ||||||||||| | || ||||||| ||||| ||||||||||| || || |||||| Sbjct 4094778 TCATTGGAAAACGTTAAGCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCA 4094837 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226 || |||| || || || ||||| || || ||||| ||||| | | || ||| | Sbjct 4094838 AAACTTCCACTGAAAAAAATACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAG 4094897 Query 42227 CCGGC--ACTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283 || ||| | | | | |||| | |||||||| ||||| ||||| |||| Sbjct 4094898 TTTGCCGACTTTGAGGAAATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGC 4094957 Query 42284 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCG 42343 |||||||| || ||||| || | |||||| ||| || ||| |||| |||||||||| Sbjct 4094958 ATCGTTTCAATAGCATTGAATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCG 4095017 Query 42344 ATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 || || | |||||||||||| ||||| | ||| || || || || |||||||| |||||| Sbjct 4095018 ATTAATATACTATACATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAA 4095077 Query 42404 CATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACT 42463 || | ||||| ||||| || || || || ||||||||| ||||||| || || || Sbjct 4095078 CAACGTGCCTCTGTAACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACA 4095137 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCG 42521 || || ||| || |||||||| || ||||| ||| || |||| ||| | | Sbjct 4095138 ATACCATCAGATGCGGCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCA 4095197 Query 42522 GTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAA 42581 ||| | | |||||||| ||||||||||| | ||| ||||| || || ||||||| Sbjct 4095198 GTGAGACGT--GCCCAATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAA 4095255 Query 42582 ATGATGCTTCTGCCT 42596 | || |||||||||| Sbjct 4095256 ACGACGCTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671092455154720